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Mutant Information

Mutant Name	FN2380 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2380 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23842033 G-A Hetero INTERGENIC
SBS Chr1 24993261 C-T Hetero INTERGENIC
SBS Chr1 25051866 C-T Homo UTR_3_PRIME
SBS Chr2 11226994 A-T Hetero INTERGENIC
SBS Chr2 14636243 G-A Hetero INTERGENIC
SBS Chr2 27078270 G-T Hetero INTERGENIC
SBS Chr2 29516074 G-T Hetero INTERGENIC
SBS Chr2 31110208 T-C Hetero INTRON
SBS Chr3 931610 G-A Hetero INTERGENIC
SBS Chr3 16207439 T-A Homo INTERGENIC
SBS Chr4 6971377 G-T Hetero INTERGENIC
SBS Chr4 7103359 C-G Homo INTERGENIC
SBS Chr4 8911244 C-T Hetero INTERGENIC
SBS Chr4 13346430 A-C Homo INTRON
SBS Chr4 21187270 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g116900
SBS Chr4 24629057 A-G Hetero INTRON
SBS Chr4 28416378 G-T Hetero INTERGENIC
SBS Chr4 35620509 T-C Hetero INTRON
SBS Chr4 36202809 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g312900
SBS Chr5 6502002 C-T Hetero INTERGENIC
SBS Chr5 10803739 A-T Hetero INTERGENIC
SBS Chr5 15632921 G-A Hetero INTERGENIC
SBS Chr6 14106995 C-A Homo INTERGENIC
SBS Chr6 16236137 A-T Hetero INTERGENIC
SBS Chr6 22884058 C-T Hetero INTERGENIC
SBS Chr7 20684 C-T Hetero INTERGENIC
SBS Chr7 16372000 G-A Hetero INTERGENIC
SBS Chr7 27598523 G-A Hetero INTERGENIC
SBS Chr8 13620210 G-T Hetero INTERGENIC
SBS Chr8 15535591 A-C Homo UTR_3_PRIME
SBS Chr8 23092402 T-A Hetero INTERGENIC
SBS Chr9 3742452 C-T Hetero INTERGENIC
SBS Chr9 8921924 C-A Hetero INTERGENIC
SBS Chr9 11943461 C-T Hetero UTR_3_PRIME
SBS Chr9 16441471 C-T Hetero INTERGENIC
SBS Chr9 20801380 T-A Hetero INTERGENIC
SBS Chr10 9404548 C-T Hetero INTERGENIC
SBS Chr10 20259833 T-A Homo INTERGENIC
SBS Chr10 21089166 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g163600
SBS Chr11 1441008 C-A Hetero INTRON
SBS Chr11 9315388 A-T Homo INTERGENIC
SBS Chr11 18061676 G-A Hetero INTERGENIC
SBS Chr12 9745397 C-T Hetero INTERGENIC
SBS Chr12 10735695 C-T Hetero INTERGENIC
SBS Chr12 15375035 C-G Hetero INTERGENIC
SBS Chr12 24513520 A-C Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2399150 2399153 3
Deletion Chr3 5205994 5206001 7
Deletion Chr2 7297308 7297312 4
Deletion Chr6 14746217 14746221 4
Deletion Chr3 15538120 15538123 3 OsKitaake03g200100
Deletion Chr1 15607270 15607271 1
Deletion Chr9 17155001 17205000 49999 8
Deletion Chr5 18417819 18417820 1
Deletion Chr6 19143799 19143800 1
Deletion Chr11 20741826 20741841 15
Deletion Chr7 22583030 22583040 10
Deletion Chr3 24529243 24529321 78 OsKitaake03g262300
Deletion Chr7 25026621 25026623 2
Deletion Chr11 27106782 27106790 8
Deletion Chr1 39719319 39719326 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 1537286 1537288 1
Insertion Chr10 22656546 22656549 2
Insertion Chr4 11035443 11035445 1
Insertion Chr12 5052123 5052125 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 16848197 17158542 OsKitaake09g125200
Inversion Chr9 17203238 17511811 OsKitaake09g128800

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 14956596 Chr2 32626803 2
Translocation Chr5 14957942 Chr2 32626814 2
Translocation Chr9 17511253 Chr4 19545385 OsKitaake04g101000
Translocation Chr8 20370879 Chr5 14991383 OsKitaake08g150850
Translocation Chr8 20371090 Chr5 14991123 OsKitaake08g150850

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23842033	G-A	Hetero	INTERGENIC
SBS	Chr1	24993261	C-T	Hetero	INTERGENIC
SBS	Chr1	25051866	C-T	Homo	UTR_3_PRIME
SBS	Chr2	11226994	A-T	Hetero	INTERGENIC
SBS	Chr2	14636243	G-A	Hetero	INTERGENIC
SBS	Chr2	27078270	G-T	Hetero	INTERGENIC
SBS	Chr2	29516074	G-T	Hetero	INTERGENIC
SBS	Chr2	31110208	T-C	Hetero	INTRON
SBS	Chr3	931610	G-A	Hetero	INTERGENIC
SBS	Chr3	16207439	T-A	Homo	INTERGENIC
SBS	Chr4	6971377	G-T	Hetero	INTERGENIC
SBS	Chr4	7103359	C-G	Homo	INTERGENIC
SBS	Chr4	8911244	C-T	Hetero	INTERGENIC
SBS	Chr4	13346430	A-C	Homo	INTRON
SBS	Chr4	21187270	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g116900
SBS	Chr4	24629057	A-G	Hetero	INTRON
SBS	Chr4	28416378	G-T	Hetero	INTERGENIC
SBS	Chr4	35620509	T-C	Hetero	INTRON
SBS	Chr4	36202809	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g312900
SBS	Chr5	6502002	C-T	Hetero	INTERGENIC
SBS	Chr5	10803739	A-T	Hetero	INTERGENIC
SBS	Chr5	15632921	G-A	Hetero	INTERGENIC
SBS	Chr6	14106995	C-A	Homo	INTERGENIC
SBS	Chr6	16236137	A-T	Hetero	INTERGENIC
SBS	Chr6	22884058	C-T	Hetero	INTERGENIC
SBS	Chr7	20684	C-T	Hetero	INTERGENIC
SBS	Chr7	16372000	G-A	Hetero	INTERGENIC
SBS	Chr7	27598523	G-A	Hetero	INTERGENIC
SBS	Chr8	13620210	G-T	Hetero	INTERGENIC
SBS	Chr8	15535591	A-C	Homo	UTR_3_PRIME
SBS	Chr8	23092402	T-A	Hetero	INTERGENIC
SBS	Chr9	3742452	C-T	Hetero	INTERGENIC
SBS	Chr9	8921924	C-A	Hetero	INTERGENIC
SBS	Chr9	11943461	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	16441471	C-T	Hetero	INTERGENIC
SBS	Chr9	20801380	T-A	Hetero	INTERGENIC
SBS	Chr10	9404548	C-T	Hetero	INTERGENIC
SBS	Chr10	20259833	T-A	Homo	INTERGENIC
SBS	Chr10	21089166	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g163600
SBS	Chr11	1441008	C-A	Hetero	INTRON
SBS	Chr11	9315388	A-T	Homo	INTERGENIC
SBS	Chr11	18061676	G-A	Hetero	INTERGENIC
SBS	Chr12	9745397	C-T	Hetero	INTERGENIC
SBS	Chr12	10735695	C-T	Hetero	INTERGENIC
SBS	Chr12	15375035	C-G	Hetero	INTERGENIC
SBS	Chr12	24513520	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2399150	2399153	3
Deletion	Chr3	5205994	5206001	7
Deletion	Chr2	7297308	7297312	4
Deletion	Chr6	14746217	14746221	4
Deletion	Chr3	15538120	15538123	3	OsKitaake03g200100
Deletion	Chr1	15607270	15607271	1
Deletion	Chr9	17155001	17205000	49999	8
Deletion	Chr5	18417819	18417820	1
Deletion	Chr6	19143799	19143800	1
Deletion	Chr11	20741826	20741841	15
Deletion	Chr7	22583030	22583040	10
Deletion	Chr3	24529243	24529321	78	OsKitaake03g262300
Deletion	Chr7	25026621	25026623	2
Deletion	Chr11	27106782	27106790	8
Deletion	Chr1	39719319	39719326	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	16848197	17158542	OsKitaake09g125200
Inversion	Chr9	17203238	17511811	OsKitaake09g128800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes