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Mutant Information

Mutant Name	FN2383 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2383 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 34269786 C-G Hetero INTERGENIC
SBS Chr1 38840190 G-C Homo INTERGENIC
SBS Chr2 7739006 A-T Hetero INTERGENIC
SBS Chr2 16838822 T-C Hetero INTERGENIC
SBS Chr2 32541102 G-A Hetero INTERGENIC
SBS Chr2 33518375 G-A Hetero INTERGENIC
SBS Chr2 35691247 C-G Hetero UTR_3_PRIME
SBS Chr2 36575138 A-T Hetero UTR_3_PRIME
SBS Chr3 6604960 A-G Hetero INTERGENIC
SBS Chr3 18607961 G-T Hetero INTERGENIC
SBS Chr3 37669173 C-T Hetero INTERGENIC
SBS Chr4 3818137 C-A Hetero INTERGENIC
SBS Chr4 4456932 C-G Hetero INTERGENIC
SBS Chr4 18861740 T-G Hetero INTERGENIC
SBS Chr4 23011337 C-T Homo INTERGENIC
SBS Chr4 31761162 A-T Hetero UTR_3_PRIME
SBS Chr5 18899691 G-A Homo INTERGENIC
SBS Chr6 2296377 C-T Hetero INTRON
SBS Chr6 19294413 C-A Hetero UTR_3_PRIME
SBS Chr6 28740712 G-A Homo INTERGENIC
SBS Chr6 28741844 A-G Homo INTERGENIC
SBS Chr7 11127025 G-A Hetero INTERGENIC
SBS Chr8 3746036 C-T Hetero INTERGENIC
SBS Chr8 14625251 C-G Hetero SPLICE_SITE_REGION
SBS Chr10 16294538 G-A Hetero INTERGENIC
SBS Chr10 21857612 T-C Hetero INTERGENIC
SBS Chr11 5840873 T-A Hetero INTERGENIC
SBS Chr11 22494786 C-G Hetero INTERGENIC
SBS Chr12 23821762 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2438001 2644000 205999 6
Deletion Chr4 5828959 5828960 1
Deletion Chr2 7105442 7105446 4
Deletion Chr3 9004403 9004404 1
Deletion Chr2 10266413 10266415 2
Deletion Chr10 15060957 15060962 5
Deletion Chr7 24850622 24850635 13
Deletion Chr8 25736015 25736018 3
Deletion Chr5 25988483 25988484 1
Deletion Chr1 27530142 27530143 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 29585761 29585764 2
Insertion Chr5 18252668 18252672 3
Insertion Chr5 23342413 23342416 2
Insertion Chr7 4036415 4036418 2
Insertion Chr11 28256086 28256089 2
Insertion Chr4 2728023 2728026 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34269786	C-G	Hetero	INTERGENIC
SBS	Chr1	38840190	G-C	Homo	INTERGENIC
SBS	Chr2	7739006	A-T	Hetero	INTERGENIC
SBS	Chr2	16838822	T-C	Hetero	INTERGENIC
SBS	Chr2	32541102	G-A	Hetero	INTERGENIC
SBS	Chr2	33518375	G-A	Hetero	INTERGENIC
SBS	Chr2	35691247	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	36575138	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	6604960	A-G	Hetero	INTERGENIC
SBS	Chr3	18607961	G-T	Hetero	INTERGENIC
SBS	Chr3	37669173	C-T	Hetero	INTERGENIC
SBS	Chr4	3818137	C-A	Hetero	INTERGENIC
SBS	Chr4	4456932	C-G	Hetero	INTERGENIC
SBS	Chr4	18861740	T-G	Hetero	INTERGENIC
SBS	Chr4	23011337	C-T	Homo	INTERGENIC
SBS	Chr4	31761162	A-T	Hetero	UTR_3_PRIME
SBS	Chr5	18899691	G-A	Homo	INTERGENIC
SBS	Chr6	2296377	C-T	Hetero	INTRON
SBS	Chr6	19294413	C-A	Hetero	UTR_3_PRIME
SBS	Chr6	28740712	G-A	Homo	INTERGENIC
SBS	Chr6	28741844	A-G	Homo	INTERGENIC
SBS	Chr7	11127025	G-A	Hetero	INTERGENIC
SBS	Chr8	3746036	C-T	Hetero	INTERGENIC
SBS	Chr8	14625251	C-G	Hetero	SPLICE_SITE_REGION
SBS	Chr10	16294538	G-A	Hetero	INTERGENIC
SBS	Chr10	21857612	T-C	Hetero	INTERGENIC
SBS	Chr11	5840873	T-A	Hetero	INTERGENIC
SBS	Chr11	22494786	C-G	Hetero	INTERGENIC
SBS	Chr12	23821762	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2438001	2644000	205999	6
Deletion	Chr4	5828959	5828960	1
Deletion	Chr2	7105442	7105446	4
Deletion	Chr3	9004403	9004404	1
Deletion	Chr2	10266413	10266415	2
Deletion	Chr10	15060957	15060962	5
Deletion	Chr7	24850622	24850635	13
Deletion	Chr8	25736015	25736018	3
Deletion	Chr5	25988483	25988484	1
Deletion	Chr1	27530142	27530143	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes