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Mutant Information

Mutant Name	FN2385 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2385 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8746086 G-A Hetero INTERGENIC
SBS Chr1 20191549 A-T Hetero INTERGENIC
SBS Chr2 19512133 G-T Hetero INTERGENIC
SBS Chr2 26102854 G-T Hetero INTERGENIC
SBS Chr2 26313291 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 464237 A-G Hetero INTRON
SBS Chr3 591839 C-T Hetero INTERGENIC
SBS Chr4 2177459 G-C Hetero INTERGENIC
SBS Chr4 4379270 G-A Hetero INTERGENIC
SBS Chr4 5001891 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g023000
SBS Chr4 7286652 G-A Homo INTERGENIC
SBS Chr4 10400984 C-G Hetero INTRON
SBS Chr4 10400985 C-T Hetero INTRON
SBS Chr4 24499824 C-T Homo SYNONYMOUS_CODING
SBS Chr4 34735313 G-A Hetero UTR_5_PRIME
SBS Chr5 13934720 A-C Hetero INTERGENIC
SBS Chr5 18065806 T-C Hetero INTERGENIC
SBS Chr5 25375754 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 25905141 G-A Hetero INTERGENIC
SBS Chr5 27520913 A-T Hetero UTR_3_PRIME
SBS Chr6 12051704 G-A Hetero INTERGENIC
SBS Chr6 13263689 A-G Hetero INTERGENIC
SBS Chr6 15714689 T-A Hetero INTERGENIC
SBS Chr6 23307374 G-C Hetero UTR_3_PRIME
SBS Chr6 28297755 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g258600
SBS Chr7 7456892 A-G Homo INTERGENIC
SBS Chr7 11772126 G-A Hetero INTERGENIC
SBS Chr7 18698879 C-T Hetero INTERGENIC
SBS Chr7 21173862 C-T Hetero INTERGENIC
SBS Chr7 26455826 C-T Hetero INTERGENIC
SBS Chr8 7953208 A-G Homo INTRON
SBS Chr8 21002408 G-A Homo INTERGENIC
SBS Chr9 3106001 A-G Homo INTERGENIC
SBS Chr9 5606531 T-C Homo INTERGENIC
SBS Chr9 7345995 A-T Hetero INTERGENIC
SBS Chr9 17846664 G-A Hetero INTERGENIC
SBS Chr9 19660356 G-T Hetero INTERGENIC
SBS Chr10 4779979 C-T Hetero INTERGENIC
SBS Chr10 10626376 G-A Homo INTERGENIC
SBS Chr10 16160684 C-T Homo INTERGENIC
SBS Chr11 4585457 C-T Homo INTERGENIC
SBS Chr11 12769084 G-A Hetero INTERGENIC
SBS Chr12 6049642 G-A Hetero INTERGENIC
SBS Chr12 21327556 A-T Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3373482 3373489 7
Deletion Chr5 7304740 7304746 6
Deletion Chr8 9381998 9382014 16
Deletion Chr7 13748958 13748961 3
Deletion Chr10 13792388 13792392 4
Deletion Chr6 16107745 16107760 15
Deletion Chr7 21189484 21189496 12
Deletion Chr7 26837401 26837402 1
Deletion Chr7 27382594 27382597 3
Deletion Chr4 28024185 28024194 9
Deletion Chr2 30126001 30431000 304999 41

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 22530528 22530533 4
Insertion Chr4 9421315 9421317 1
Insertion Chr4 15134541 15134545 3
Insertion Chr7 705290 705296 5

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8746086	G-A	Hetero	INTERGENIC
SBS	Chr1	20191549	A-T	Hetero	INTERGENIC
SBS	Chr2	19512133	G-T	Hetero	INTERGENIC
SBS	Chr2	26102854	G-T	Hetero	INTERGENIC
SBS	Chr2	26313291	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	464237	A-G	Hetero	INTRON
SBS	Chr3	591839	C-T	Hetero	INTERGENIC
SBS	Chr4	2177459	G-C	Hetero	INTERGENIC
SBS	Chr4	4379270	G-A	Hetero	INTERGENIC
SBS	Chr4	5001891	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g023000
SBS	Chr4	7286652	G-A	Homo	INTERGENIC
SBS	Chr4	10400984	C-G	Hetero	INTRON
SBS	Chr4	10400985	C-T	Hetero	INTRON
SBS	Chr4	24499824	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	34735313	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	13934720	A-C	Hetero	INTERGENIC
SBS	Chr5	18065806	T-C	Hetero	INTERGENIC
SBS	Chr5	25375754	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	25905141	G-A	Hetero	INTERGENIC
SBS	Chr5	27520913	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	12051704	G-A	Hetero	INTERGENIC
SBS	Chr6	13263689	A-G	Hetero	INTERGENIC
SBS	Chr6	15714689	T-A	Hetero	INTERGENIC
SBS	Chr6	23307374	G-C	Hetero	UTR_3_PRIME
SBS	Chr6	28297755	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g258600
SBS	Chr7	7456892	A-G	Homo	INTERGENIC
SBS	Chr7	11772126	G-A	Hetero	INTERGENIC
SBS	Chr7	18698879	C-T	Hetero	INTERGENIC
SBS	Chr7	21173862	C-T	Hetero	INTERGENIC
SBS	Chr7	26455826	C-T	Hetero	INTERGENIC
SBS	Chr8	7953208	A-G	Homo	INTRON
SBS	Chr8	21002408	G-A	Homo	INTERGENIC
SBS	Chr9	3106001	A-G	Homo	INTERGENIC
SBS	Chr9	5606531	T-C	Homo	INTERGENIC
SBS	Chr9	7345995	A-T	Hetero	INTERGENIC
SBS	Chr9	17846664	G-A	Hetero	INTERGENIC
SBS	Chr9	19660356	G-T	Hetero	INTERGENIC
SBS	Chr10	4779979	C-T	Hetero	INTERGENIC
SBS	Chr10	10626376	G-A	Homo	INTERGENIC
SBS	Chr10	16160684	C-T	Homo	INTERGENIC
SBS	Chr11	4585457	C-T	Homo	INTERGENIC
SBS	Chr11	12769084	G-A	Hetero	INTERGENIC
SBS	Chr12	6049642	G-A	Hetero	INTERGENIC
SBS	Chr12	21327556	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3373482	3373489	7
Deletion	Chr5	7304740	7304746	6
Deletion	Chr8	9381998	9382014	16
Deletion	Chr7	13748958	13748961	3
Deletion	Chr10	13792388	13792392	4
Deletion	Chr6	16107745	16107760	15
Deletion	Chr7	21189484	21189496	12
Deletion	Chr7	26837401	26837402	1
Deletion	Chr7	27382594	27382597	3
Deletion	Chr4	28024185	28024194	9
Deletion	Chr2	30126001	30431000	304999	41

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes