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Mutant Information

Mutant Name	FN2386 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2386 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 78

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3448535 G-A Hetero INTRON
SBS Chr1 14055408 G-T Hetero INTERGENIC
SBS Chr1 16928077 A-G Homo INTERGENIC
SBS Chr1 17895552 T-A Hetero INTERGENIC
SBS Chr1 21938717 G-A Hetero INTERGENIC
SBS Chr1 31362266 T-C Hetero UTR_5_PRIME
SBS Chr1 36030073 A-T Hetero INTERGENIC
SBS Chr1 36093374 A-G Hetero INTERGENIC
SBS Chr1 36674542 C-T Hetero INTERGENIC
SBS Chr1 38706407 C-A Hetero SYNONYMOUS_CODING
SBS Chr2 4742888 T-C Hetero INTRON
SBS Chr2 6019323 G-T Hetero INTERGENIC
SBS Chr2 6019328 A-T Hetero INTERGENIC
SBS Chr2 18007036 C-T Hetero INTERGENIC
SBS Chr2 19847146 C-T Homo INTERGENIC
SBS Chr2 35776444 A-G Hetero INTERGENIC
SBS Chr3 1221755 G-A Hetero INTERGENIC
SBS Chr3 3186991 T-C Hetero INTERGENIC
SBS Chr3 4700459 A-G Hetero INTRON
SBS Chr3 6637253 T-C Hetero INTERGENIC
SBS Chr3 10017834 C-T Hetero INTERGENIC
SBS Chr3 10965033 T-A Hetero INTERGENIC
SBS Chr3 18050559 G-A Hetero INTERGENIC
SBS Chr3 23072363 G-A Hetero INTERGENIC
SBS Chr3 28276033 G-A Hetero INTERGENIC
SBS Chr3 30925694 T-C Hetero INTRON
SBS Chr3 33393317 C-A Hetero INTERGENIC
SBS Chr4 344636 A-T Homo INTERGENIC
SBS Chr4 4598602 T-C Hetero INTERGENIC
SBS Chr4 5419161 A-G Hetero INTERGENIC
SBS Chr4 7062652 G-T Hetero INTERGENIC
SBS Chr4 11145531 G-A Hetero INTERGENIC
SBS Chr4 13330331 C-T Hetero INTERGENIC
SBS Chr4 14166932 G-A Hetero INTERGENIC
SBS Chr4 19472785 C-T Hetero INTRON
SBS Chr4 27103828 A-T Homo INTERGENIC
SBS Chr4 27293794 G-C Hetero INTRON
SBS Chr5 11899062 C-A Homo INTERGENIC
SBS Chr5 11899065 A-T Homo INTERGENIC
SBS Chr5 26022235 C-T Hetero INTERGENIC
SBS Chr5 30262446 T-C Hetero INTERGENIC
SBS Chr6 513279 A-G Hetero UTR_3_PRIME
SBS Chr6 18284151 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g167403
SBS Chr6 18770748 C-A Hetero INTERGENIC
SBS Chr7 4355345 C-T Hetero INTERGENIC
SBS Chr7 15952392 G-A Hetero INTERGENIC
SBS Chr7 16614749 C-T Homo UTR_3_PRIME
SBS Chr7 16614750 A-T Homo UTR_3_PRIME
SBS Chr7 16653614 C-T Hetero INTERGENIC
SBS Chr7 16851799 G-A Hetero INTERGENIC
SBS Chr7 18719337 T-C Hetero INTERGENIC
SBS Chr7 20491371 G-C Hetero INTERGENIC
SBS Chr7 25291879 C-T Hetero INTERGENIC
SBS Chr7 26077821 G-A Hetero INTERGENIC
SBS Chr7 27403398 G-A Homo INTERGENIC
SBS Chr8 4398236 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g050000
SBS Chr8 6469542 G-C Hetero INTERGENIC
SBS Chr8 9971678 T-C Hetero INTERGENIC
SBS Chr8 13392291 G-C Hetero INTERGENIC
SBS Chr8 18706721 T-C Hetero INTERGENIC
SBS Chr8 23956215 T-C Hetero INTERGENIC
SBS Chr8 26358783 T-C Hetero INTRON
SBS Chr9 3039846 T-C Hetero INTERGENIC
SBS Chr9 4881654 G-A Hetero INTERGENIC
SBS Chr9 10006461 C-A Hetero INTERGENIC
SBS Chr9 14467624 G-A Hetero INTERGENIC
SBS Chr9 17663357 A-G Hetero INTERGENIC
SBS Chr10 9132295 G-A Hetero INTERGENIC
SBS Chr10 14085916 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g087400
SBS Chr11 773276 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g009800
SBS Chr11 17584369 C-G Hetero UTR_3_PRIME
SBS Chr12 559768 G-T Hetero INTRON
SBS Chr12 1836989 G-A Hetero INTERGENIC
SBS Chr12 6965792 A-T Hetero INTRON
SBS Chr12 8362975 C-T Hetero INTRON
SBS Chr12 17212759 A-G Hetero INTERGENIC
SBS Chr12 23851825 G-A Hetero INTERGENIC
SBS Chr12 24382978 C-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1911405 1911406 1
Deletion Chr8 3238061 3238062 1
Deletion Chr5 4072595 4072624 29
Deletion Chr4 6550001 6574000 23999 2
Deletion Chr11 8136332 8136343 11 OsKitaake11g089600
Deletion Chr2 11580887 11580888 1
Deletion Chr12 12144920 12144921 1
Deletion Chr3 12225702 12225703 1
Deletion Chr10 14695639 14695641 2
Deletion Chr2 15998154 15998158 4
Deletion Chr7 16759250 16759262 12
Deletion Chr10 16778745 16778746 1
Deletion Chr7 17027369 17027371 2
Deletion Chr9 20045078 20045080 2
Deletion Chr7 20066001 20157000 90999 12
Deletion Chr1 20483799 20483807 8
Deletion Chr6 20997753 20997773 20
Deletion Chr6 29747305 29747308 3
Deletion Chr1 36591187 36591189 2 OsKitaake01g388800

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16285087 16285090 2
Insertion Chr5 20291898 20291901 2
Insertion Chr8 22467590 22467593 2
Insertion Chr10 10556721 10556724 2
Insertion Chr11 12450264 12450279 14

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 15275354 15598324 OsKitaake02g159400
Inversion Chr2 15607309 16063186 OsKitaake02g161400
Inversion Chr1 42386000 42641949 OsKitaake01g469900
Inversion Chr1 42386001 42641950 OsKitaake01g469900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 7433427 Chr2 15607285 OsKitaake02g161400
Translocation Chr9 8629720 Chr2 15601303

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3448535	G-A	Hetero	INTRON
SBS	Chr1	14055408	G-T	Hetero	INTERGENIC
SBS	Chr1	16928077	A-G	Homo	INTERGENIC
SBS	Chr1	17895552	T-A	Hetero	INTERGENIC
SBS	Chr1	21938717	G-A	Hetero	INTERGENIC
SBS	Chr1	31362266	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	36030073	A-T	Hetero	INTERGENIC
SBS	Chr1	36093374	A-G	Hetero	INTERGENIC
SBS	Chr1	36674542	C-T	Hetero	INTERGENIC
SBS	Chr1	38706407	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	4742888	T-C	Hetero	INTRON
SBS	Chr2	6019323	G-T	Hetero	INTERGENIC
SBS	Chr2	6019328	A-T	Hetero	INTERGENIC
SBS	Chr2	18007036	C-T	Hetero	INTERGENIC
SBS	Chr2	19847146	C-T	Homo	INTERGENIC
SBS	Chr2	35776444	A-G	Hetero	INTERGENIC
SBS	Chr3	1221755	G-A	Hetero	INTERGENIC
SBS	Chr3	3186991	T-C	Hetero	INTERGENIC
SBS	Chr3	4700459	A-G	Hetero	INTRON
SBS	Chr3	6637253	T-C	Hetero	INTERGENIC
SBS	Chr3	10017834	C-T	Hetero	INTERGENIC
SBS	Chr3	10965033	T-A	Hetero	INTERGENIC
SBS	Chr3	18050559	G-A	Hetero	INTERGENIC
SBS	Chr3	23072363	G-A	Hetero	INTERGENIC
SBS	Chr3	28276033	G-A	Hetero	INTERGENIC
SBS	Chr3	30925694	T-C	Hetero	INTRON
SBS	Chr3	33393317	C-A	Hetero	INTERGENIC
SBS	Chr4	344636	A-T	Homo	INTERGENIC
SBS	Chr4	4598602	T-C	Hetero	INTERGENIC
SBS	Chr4	5419161	A-G	Hetero	INTERGENIC
SBS	Chr4	7062652	G-T	Hetero	INTERGENIC
SBS	Chr4	11145531	G-A	Hetero	INTERGENIC
SBS	Chr4	13330331	C-T	Hetero	INTERGENIC
SBS	Chr4	14166932	G-A	Hetero	INTERGENIC
SBS	Chr4	19472785	C-T	Hetero	INTRON
SBS	Chr4	27103828	A-T	Homo	INTERGENIC
SBS	Chr4	27293794	G-C	Hetero	INTRON
SBS	Chr5	11899062	C-A	Homo	INTERGENIC
SBS	Chr5	11899065	A-T	Homo	INTERGENIC
SBS	Chr5	26022235	C-T	Hetero	INTERGENIC
SBS	Chr5	30262446	T-C	Hetero	INTERGENIC
SBS	Chr6	513279	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	18284151	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g167403
SBS	Chr6	18770748	C-A	Hetero	INTERGENIC
SBS	Chr7	4355345	C-T	Hetero	INTERGENIC
SBS	Chr7	15952392	G-A	Hetero	INTERGENIC
SBS	Chr7	16614749	C-T	Homo	UTR_3_PRIME
SBS	Chr7	16614750	A-T	Homo	UTR_3_PRIME
SBS	Chr7	16653614	C-T	Hetero	INTERGENIC
SBS	Chr7	16851799	G-A	Hetero	INTERGENIC
SBS	Chr7	18719337	T-C	Hetero	INTERGENIC
SBS	Chr7	20491371	G-C	Hetero	INTERGENIC
SBS	Chr7	25291879	C-T	Hetero	INTERGENIC
SBS	Chr7	26077821	G-A	Hetero	INTERGENIC
SBS	Chr7	27403398	G-A	Homo	INTERGENIC
SBS	Chr8	4398236	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g050000
SBS	Chr8	6469542	G-C	Hetero	INTERGENIC
SBS	Chr8	9971678	T-C	Hetero	INTERGENIC
SBS	Chr8	13392291	G-C	Hetero	INTERGENIC
SBS	Chr8	18706721	T-C	Hetero	INTERGENIC
SBS	Chr8	23956215	T-C	Hetero	INTERGENIC
SBS	Chr8	26358783	T-C	Hetero	INTRON
SBS	Chr9	3039846	T-C	Hetero	INTERGENIC
SBS	Chr9	4881654	G-A	Hetero	INTERGENIC
SBS	Chr9	10006461	C-A	Hetero	INTERGENIC
SBS	Chr9	14467624	G-A	Hetero	INTERGENIC
SBS	Chr9	17663357	A-G	Hetero	INTERGENIC
SBS	Chr10	9132295	G-A	Hetero	INTERGENIC
SBS	Chr10	14085916	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g087400
SBS	Chr11	773276	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g009800
SBS	Chr11	17584369	C-G	Hetero	UTR_3_PRIME
SBS	Chr12	559768	G-T	Hetero	INTRON
SBS	Chr12	1836989	G-A	Hetero	INTERGENIC
SBS	Chr12	6965792	A-T	Hetero	INTRON
SBS	Chr12	8362975	C-T	Hetero	INTRON
SBS	Chr12	17212759	A-G	Hetero	INTERGENIC
SBS	Chr12	23851825	G-A	Hetero	INTERGENIC
SBS	Chr12	24382978	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1911405	1911406	1
Deletion	Chr8	3238061	3238062	1
Deletion	Chr5	4072595	4072624	29
Deletion	Chr4	6550001	6574000	23999	2
Deletion	Chr11	8136332	8136343	11	OsKitaake11g089600
Deletion	Chr2	11580887	11580888	1
Deletion	Chr12	12144920	12144921	1
Deletion	Chr3	12225702	12225703	1
Deletion	Chr10	14695639	14695641	2
Deletion	Chr2	15998154	15998158	4
Deletion	Chr7	16759250	16759262	12
Deletion	Chr10	16778745	16778746	1
Deletion	Chr7	17027369	17027371	2
Deletion	Chr9	20045078	20045080	2
Deletion	Chr7	20066001	20157000	90999	12
Deletion	Chr1	20483799	20483807	8
Deletion	Chr6	20997753	20997773	20
Deletion	Chr6	29747305	29747308	3
Deletion	Chr1	36591187	36591189	2	OsKitaake01g388800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	15275354	15598324	OsKitaake02g159400
Inversion	Chr2	15607309	16063186	OsKitaake02g161400
Inversion	Chr1	42386000	42641949	OsKitaake01g469900
Inversion	Chr1	42386001	42641950	OsKitaake01g469900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes