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Mutant Information

Mutant Name	FN2387 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2387 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2192860 G-T Homo INTRON
SBS Chr1 16074465 G-T Hetero INTERGENIC
SBS Chr1 17485997 G-A Hetero INTERGENIC
SBS Chr1 23594863 C-T Hetero INTERGENIC
SBS Chr1 25421289 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g246400
SBS Chr1 26949023 C-T Hetero INTERGENIC
SBS Chr1 33396065 A-G Homo INTERGENIC
SBS Chr2 5015169 C-T Hetero INTERGENIC
SBS Chr2 14175715 A-G Hetero INTERGENIC
SBS Chr2 15429166 G-A Hetero INTERGENIC
SBS Chr2 20357637 T-C Homo INTRON
SBS Chr2 20738482 G-A Hetero INTERGENIC
SBS Chr2 26617553 T-C Hetero INTRON
SBS Chr2 34333069 T-A Hetero INTERGENIC
SBS Chr2 35435459 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g371800
SBS Chr3 3443449 G-T Hetero INTRON
SBS Chr3 10850859 G-A Hetero INTERGENIC
SBS Chr3 15886277 T-A Hetero INTERGENIC
SBS Chr3 15896799 C-T Hetero INTRON
SBS Chr3 32209659 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 282944 G-A Hetero INTERGENIC
SBS Chr4 7523579 G-T Hetero INTERGENIC
SBS Chr4 25421094 G-A Homo INTERGENIC
SBS Chr5 17749541 C-T Hetero INTERGENIC
SBS Chr5 17789800 A-G Hetero INTERGENIC
SBS Chr5 19755585 T-C Hetero INTRON
SBS Chr5 28725091 G-A Hetero INTERGENIC
SBS Chr6 5737623 G-A Hetero INTERGENIC
SBS Chr6 15786779 C-T Homo INTERGENIC
SBS Chr6 19749528 G-A Hetero INTERGENIC
SBS Chr6 30992231 G-A Homo INTERGENIC
SBS Chr7 4357341 A-T Hetero START_GAINED
SBS Chr7 9693979 C-T Hetero INTERGENIC
SBS Chr7 16179629 G-A Hetero INTERGENIC
SBS Chr7 19902183 C-A Hetero INTERGENIC
SBS Chr7 21718024 C-T Hetero UTR_5_PRIME
SBS Chr7 21997869 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g184700
SBS Chr7 24612542 G-A Hetero INTERGENIC
SBS Chr8 1939864 G-A Hetero INTERGENIC
SBS Chr8 7638063 C-T Hetero INTERGENIC
SBS Chr8 7701017 G-A Hetero INTERGENIC
SBS Chr8 16403374 C-A Hetero INTERGENIC
SBS Chr8 28609832 C-T Hetero INTRON
SBS Chr9 2912812 A-G Hetero INTERGENIC
SBS Chr9 8610125 G-T Hetero INTERGENIC
SBS Chr9 14344309 G-A Hetero INTERGENIC
SBS Chr10 5279323 C-T Hetero INTERGENIC
SBS Chr10 16606461 C-G Hetero INTERGENIC
SBS Chr10 17012985 G-A Hetero INTERGENIC
SBS Chr10 19257405 G-A Hetero INTERGENIC
SBS Chr11 1704283 A-G Hetero INTERGENIC
SBS Chr11 6062985 C-G Hetero INTERGENIC
SBS Chr11 14297960 G-A Homo INTRON
SBS Chr11 15260915 G-T Hetero INTERGENIC
SBS Chr11 24338602 C-T Hetero INTERGENIC
SBS Chr12 21335979 C-T Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1652767 1652799 32
Deletion Chr6 1669614 1669616 2
Deletion Chr6 3796085 3796086 1
Deletion Chr11 3877820 3877823 3
Deletion Chr4 5516001 5618000 101999 7
Deletion Chr5 5919255 5919256 1
Deletion Chr3 5947786 5947794 8 OsKitaake03g084900
Deletion Chr5 7248293 7248305 12
Deletion Chr7 7971946 7971948 2 OsKitaake07g087800
Deletion Chr11 8994198 8994203 5
Deletion Chr7 11190001 11224000 33999 4
Deletion Chr7 13556679 13556684 5
Deletion Chr6 14296760 14296770 10
Deletion Chr10 14423056 14423059 3
Deletion Chr6 15549116 15549117 1
Deletion Chr10 16100872 16100881 9
Deletion Chr4 19084920 19084925 5
Deletion Chr8 19950572 19950604 32
Deletion Chr9 21803727 21803729 2
Deletion Chr7 21946856 21946858 2
Deletion Chr3 22053342 22053344 2
Deletion Chr7 22589148 22589149 1
Deletion Chr1 24658172 24658178 6
Deletion Chr7 26328221 26328223 2
Deletion Chr11 26631212 26631214 2
Deletion Chr6 28264893 28264895 2
Deletion Chr2 33914166 33914177 11

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 22268486 22268489 2
Insertion Chr4 20804112 20804116 3
Insertion Chr6 1405007 1405010 2
Insertion Chr7 19536450 19536453 2
Insertion Chr7 27065876 27065879 2
Insertion Chr8 4450317 4450320 2
Insertion Chr9 15090912 15090917 4
Insertion Chr10 4185090 4185094 3
Insertion Chr12 9076387 9076390 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 6460797 6822767 OsKitaake10g043900
Inversion Chr9 6506622 7018869 OsKitaake09g040500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 533037 Chr9 1420292
Translocation Chr10 533043 Chr9 1405424

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2192860	G-T	Homo	INTRON
SBS	Chr1	16074465	G-T	Hetero	INTERGENIC
SBS	Chr1	17485997	G-A	Hetero	INTERGENIC
SBS	Chr1	23594863	C-T	Hetero	INTERGENIC
SBS	Chr1	25421289	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g246400
SBS	Chr1	26949023	C-T	Hetero	INTERGENIC
SBS	Chr1	33396065	A-G	Homo	INTERGENIC
SBS	Chr2	5015169	C-T	Hetero	INTERGENIC
SBS	Chr2	14175715	A-G	Hetero	INTERGENIC
SBS	Chr2	15429166	G-A	Hetero	INTERGENIC
SBS	Chr2	20357637	T-C	Homo	INTRON
SBS	Chr2	20738482	G-A	Hetero	INTERGENIC
SBS	Chr2	26617553	T-C	Hetero	INTRON
SBS	Chr2	34333069	T-A	Hetero	INTERGENIC
SBS	Chr2	35435459	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g371800
SBS	Chr3	3443449	G-T	Hetero	INTRON
SBS	Chr3	10850859	G-A	Hetero	INTERGENIC
SBS	Chr3	15886277	T-A	Hetero	INTERGENIC
SBS	Chr3	15896799	C-T	Hetero	INTRON
SBS	Chr3	32209659	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	282944	G-A	Hetero	INTERGENIC
SBS	Chr4	7523579	G-T	Hetero	INTERGENIC
SBS	Chr4	25421094	G-A	Homo	INTERGENIC
SBS	Chr5	17749541	C-T	Hetero	INTERGENIC
SBS	Chr5	17789800	A-G	Hetero	INTERGENIC
SBS	Chr5	19755585	T-C	Hetero	INTRON
SBS	Chr5	28725091	G-A	Hetero	INTERGENIC
SBS	Chr6	5737623	G-A	Hetero	INTERGENIC
SBS	Chr6	15786779	C-T	Homo	INTERGENIC
SBS	Chr6	19749528	G-A	Hetero	INTERGENIC
SBS	Chr6	30992231	G-A	Homo	INTERGENIC
SBS	Chr7	4357341	A-T	Hetero	START_GAINED
SBS	Chr7	9693979	C-T	Hetero	INTERGENIC
SBS	Chr7	16179629	G-A	Hetero	INTERGENIC
SBS	Chr7	19902183	C-A	Hetero	INTERGENIC
SBS	Chr7	21718024	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	21997869	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g184700
SBS	Chr7	24612542	G-A	Hetero	INTERGENIC
SBS	Chr8	1939864	G-A	Hetero	INTERGENIC
SBS	Chr8	7638063	C-T	Hetero	INTERGENIC
SBS	Chr8	7701017	G-A	Hetero	INTERGENIC
SBS	Chr8	16403374	C-A	Hetero	INTERGENIC
SBS	Chr8	28609832	C-T	Hetero	INTRON
SBS	Chr9	2912812	A-G	Hetero	INTERGENIC
SBS	Chr9	8610125	G-T	Hetero	INTERGENIC
SBS	Chr9	14344309	G-A	Hetero	INTERGENIC
SBS	Chr10	5279323	C-T	Hetero	INTERGENIC
SBS	Chr10	16606461	C-G	Hetero	INTERGENIC
SBS	Chr10	17012985	G-A	Hetero	INTERGENIC
SBS	Chr10	19257405	G-A	Hetero	INTERGENIC
SBS	Chr11	1704283	A-G	Hetero	INTERGENIC
SBS	Chr11	6062985	C-G	Hetero	INTERGENIC
SBS	Chr11	14297960	G-A	Homo	INTRON
SBS	Chr11	15260915	G-T	Hetero	INTERGENIC
SBS	Chr11	24338602	C-T	Hetero	INTERGENIC
SBS	Chr12	21335979	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1652767	1652799	32
Deletion	Chr6	1669614	1669616	2
Deletion	Chr6	3796085	3796086	1
Deletion	Chr11	3877820	3877823	3
Deletion	Chr4	5516001	5618000	101999	7
Deletion	Chr5	5919255	5919256	1
Deletion	Chr3	5947786	5947794	8	OsKitaake03g084900
Deletion	Chr5	7248293	7248305	12
Deletion	Chr7	7971946	7971948	2	OsKitaake07g087800
Deletion	Chr11	8994198	8994203	5
Deletion	Chr7	11190001	11224000	33999	4
Deletion	Chr7	13556679	13556684	5
Deletion	Chr6	14296760	14296770	10
Deletion	Chr10	14423056	14423059	3
Deletion	Chr6	15549116	15549117	1
Deletion	Chr10	16100872	16100881	9
Deletion	Chr4	19084920	19084925	5
Deletion	Chr8	19950572	19950604	32
Deletion	Chr9	21803727	21803729	2
Deletion	Chr7	21946856	21946858	2
Deletion	Chr3	22053342	22053344	2
Deletion	Chr7	22589148	22589149	1
Deletion	Chr1	24658172	24658178	6
Deletion	Chr7	26328221	26328223	2
Deletion	Chr11	26631212	26631214	2
Deletion	Chr6	28264893	28264895	2
Deletion	Chr2	33914166	33914177	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6460797	6822767	OsKitaake10g043900
Inversion	Chr9	6506622	7018869	OsKitaake09g040500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes