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Mutant Information

Mutant Name	FN2388 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2388 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19210804 T-C Hetero INTERGENIC
SBS Chr1 23989945 A-T Hetero INTERGENIC
SBS Chr1 24048841 T-G Hetero INTERGENIC
SBS Chr1 29036561 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g281700
SBS Chr1 40442041 C-T Hetero INTERGENIC
SBS Chr1 43761665 T-C Hetero INTERGENIC
SBS Chr2 2893181 A-T Hetero INTERGENIC
SBS Chr2 8849198 A-G Hetero INTRON
SBS Chr2 12352560 C-T Hetero INTERGENIC
SBS Chr2 13018449 G-A Homo INTERGENIC
SBS Chr2 18341146 C-A Hetero INTERGENIC
SBS Chr2 26617305 G-A Homo SYNONYMOUS_CODING
SBS Chr2 32807945 T-C Hetero INTERGENIC
SBS Chr2 33002855 G-A Hetero INTERGENIC
SBS Chr2 35745662 G-C Hetero INTERGENIC
SBS Chr3 12906350 A-T Homo INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 30512445 G-A Homo INTERGENIC
SBS Chr4 7895811 G-T Homo INTERGENIC
SBS Chr4 11536811 G-T Hetero INTERGENIC
SBS Chr4 12096923 G-T Hetero UTR_3_PRIME
SBS Chr4 34996664 G-A Hetero UTR_3_PRIME
SBS Chr5 3136458 A-T Homo INTERGENIC
SBS Chr5 4295173 A-G Homo INTERGENIC
SBS Chr5 14348804 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 25423298 G-A Hetero INTERGENIC
SBS Chr7 673476 G-A Hetero INTERGENIC
SBS Chr7 20254200 T-C Homo INTERGENIC
SBS Chr8 11780772 T-G Hetero INTERGENIC
SBS Chr8 12824422 T-A Homo INTERGENIC
SBS Chr8 19345639 G-A Hetero INTERGENIC
SBS Chr9 21944968 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g195000
SBS Chr11 633309 C-T Homo INTERGENIC
SBS Chr11 22387744 T-A Hetero INTERGENIC
SBS Chr11 22387745 C-A Hetero INTERGENIC
SBS Chr12 14567741 T-C Hetero UTR_3_PRIME
SBS Chr12 22791103 C-T Hetero INTERGENIC
SBS Chr12 23351205 T-C Hetero INTERGENIC
SBS Chr12 24412781 C-T Hetero INTERGENIC
SBS Chr12 24418035 C-T Hetero INTERGENIC
SBS Chr12 24634889 T-G Hetero INTRON

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2478507 2478508 1
Deletion Chr12 4424086 4424106 20
Deletion Chr3 6500001 6516000 15999 5
Deletion Chr1 6538409 6538421 12
Deletion Chr8 8229090 8229093 3
Deletion Chr4 9023416 9023422 6
Deletion Chr3 12034060 12034067 7
Deletion Chr2 14747241 14747243 2
Deletion Chr7 14906680 14906682 2
Deletion Chr10 18830540 18830546 6
Deletion Chr3 19292632 19292634 2
Deletion Chr10 19432001 19452000 19999 4
Deletion Chr3 19797525 19797553 28
Deletion Chr10 20355399 20355401 2
Deletion Chr6 20809873 20809879 6
Deletion Chr6 21080228 21080229 1
Deletion Chr11 22662735 22662737 2
Deletion Chr7 23368332 23368338 6
Deletion Chr4 34448385 34448388 3
Deletion Chr3 35853063 35853068 5

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 11583634 11583637 2
Insertion Chr4 9393085 9393088 2
Insertion Chr7 3185991 3185994 2
Insertion Chr10 21013292 21013295 2
Insertion Chr5 30239995 30240003 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 5825375 5846912 OsKitaake03g082900
Inversion Chr3 5825396 5846913 OsKitaake03g082900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19210804	T-C	Hetero	INTERGENIC
SBS	Chr1	23989945	A-T	Hetero	INTERGENIC
SBS	Chr1	24048841	T-G	Hetero	INTERGENIC
SBS	Chr1	29036561	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g281700
SBS	Chr1	40442041	C-T	Hetero	INTERGENIC
SBS	Chr1	43761665	T-C	Hetero	INTERGENIC
SBS	Chr2	2893181	A-T	Hetero	INTERGENIC
SBS	Chr2	8849198	A-G	Hetero	INTRON
SBS	Chr2	12352560	C-T	Hetero	INTERGENIC
SBS	Chr2	13018449	G-A	Homo	INTERGENIC
SBS	Chr2	18341146	C-A	Hetero	INTERGENIC
SBS	Chr2	26617305	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	32807945	T-C	Hetero	INTERGENIC
SBS	Chr2	33002855	G-A	Hetero	INTERGENIC
SBS	Chr2	35745662	G-C	Hetero	INTERGENIC
SBS	Chr3	12906350	A-T	Homo	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	30512445	G-A	Homo	INTERGENIC
SBS	Chr4	7895811	G-T	Homo	INTERGENIC
SBS	Chr4	11536811	G-T	Hetero	INTERGENIC
SBS	Chr4	12096923	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	34996664	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	3136458	A-T	Homo	INTERGENIC
SBS	Chr5	4295173	A-G	Homo	INTERGENIC
SBS	Chr5	14348804	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	25423298	G-A	Hetero	INTERGENIC
SBS	Chr7	673476	G-A	Hetero	INTERGENIC
SBS	Chr7	20254200	T-C	Homo	INTERGENIC
SBS	Chr8	11780772	T-G	Hetero	INTERGENIC
SBS	Chr8	12824422	T-A	Homo	INTERGENIC
SBS	Chr8	19345639	G-A	Hetero	INTERGENIC
SBS	Chr9	21944968	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g195000
SBS	Chr11	633309	C-T	Homo	INTERGENIC
SBS	Chr11	22387744	T-A	Hetero	INTERGENIC
SBS	Chr11	22387745	C-A	Hetero	INTERGENIC
SBS	Chr12	14567741	T-C	Hetero	UTR_3_PRIME
SBS	Chr12	22791103	C-T	Hetero	INTERGENIC
SBS	Chr12	23351205	T-C	Hetero	INTERGENIC
SBS	Chr12	24412781	C-T	Hetero	INTERGENIC
SBS	Chr12	24418035	C-T	Hetero	INTERGENIC
SBS	Chr12	24634889	T-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2478507	2478508	1
Deletion	Chr12	4424086	4424106	20
Deletion	Chr3	6500001	6516000	15999	5
Deletion	Chr1	6538409	6538421	12
Deletion	Chr8	8229090	8229093	3
Deletion	Chr4	9023416	9023422	6
Deletion	Chr3	12034060	12034067	7
Deletion	Chr2	14747241	14747243	2
Deletion	Chr7	14906680	14906682	2
Deletion	Chr10	18830540	18830546	6
Deletion	Chr3	19292632	19292634	2
Deletion	Chr10	19432001	19452000	19999	4
Deletion	Chr3	19797525	19797553	28
Deletion	Chr10	20355399	20355401	2
Deletion	Chr6	20809873	20809879	6
Deletion	Chr6	21080228	21080229	1
Deletion	Chr11	22662735	22662737	2
Deletion	Chr7	23368332	23368338	6
Deletion	Chr4	34448385	34448388	3
Deletion	Chr3	35853063	35853068	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5825375	5846912	OsKitaake03g082900
Inversion	Chr3	5825396	5846913	OsKitaake03g082900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes