Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN239-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN239-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9200995 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 11112147 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 19911950 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 26105309 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 199254 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 10399689 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 17219217 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 19184450 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 21411669 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 21643371 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 25329298 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 2027873 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5105512 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 28715261 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 32149994 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 9605153 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 12554148 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19670398 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 7355447 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27631580 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 13470556 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6578368 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8364997 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 9901755 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 23506515 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 23718822 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g189600 |
| SBS | Chr12 | 3258213 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 11412614 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24896528 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25767372 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 26764187 | A-C | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 56230 | 56232 | 2 | |
| Deletion | Chr8 | 10679502 | 10679506 | 4 | |
| Deletion | Chr11 | 11588480 | 11588482 | 2 | |
| Deletion | Chr12 | 14198006 | 14198007 | 1 | |
| Deletion | Chr3 | 18945496 | 18945510 | 14 | OsKitaake03g227400 |
| Deletion | Chr10 | 19956685 | 19956692 | 7 | |
| Deletion | Chr3 | 21486153 | 21486160 | 7 | |
| Deletion | Chr7 | 23995974 | 23995978 | 4 | |
| Deletion | Chr12 | 24075442 | 24075444 | 2 | |
| Deletion | Chr4 | 24570105 | 24570117 | 12 | |
| Deletion | Chr5 | 28523159 | 28523162 | 3 | |
| Deletion | Chr6 | 30850370 | 30850386 | 16 | |
| Deletion | Chr4 | 31690357 | 31690359 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 21931272 | 21931277 | 4 | |
| Insertion | Chr5 | 30188951 | 30188954 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 8895187 | 9636259 | OsKitaake12g093000 |
| Inversion | Chr12 | 8895198 | 9636263 | OsKitaake12g093000 |
| Inversion | Chr6 | 15756919 | 16036908 | OsKitaake06g154200 |
| Inversion | Chr8 | 28832204 | 28998406 |