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Mutant Information

Mutant Name	FN2390 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2390 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8192398 C-A Hetero INTRON
SBS Chr1 8192399 C-T Hetero INTRON
SBS Chr1 19387499 A-C Hetero INTERGENIC
SBS Chr1 30186833 C-A Homo INTERGENIC
SBS Chr1 33208523 A-G Homo INTRON
SBS Chr1 39521883 C-A Hetero INTERGENIC
SBS Chr2 4232980 T-C Homo INTERGENIC
SBS Chr2 5821835 C-A Homo INTRON
SBS Chr2 5821836 A-T Homo INTRON
SBS Chr2 8431561 C-A Homo INTERGENIC
SBS Chr2 14473219 T-A Hetero INTERGENIC
SBS Chr2 20648247 T-C Hetero INTERGENIC
SBS Chr2 21864858 T-G Hetero INTRON
SBS Chr2 31752842 T-A Hetero UTR_3_PRIME
SBS Chr3 13544496 A-C Hetero INTERGENIC
SBS Chr3 20184667 G-A Hetero INTERGENIC
SBS Chr3 20218966 T-G Hetero INTERGENIC
SBS Chr3 21071636 G-A Hetero INTERGENIC
SBS Chr4 3709541 G-T Hetero INTERGENIC
SBS Chr6 3180720 G-C Hetero INTERGENIC
SBS Chr6 10973305 G-A Hetero INTERGENIC
SBS Chr6 27094709 T-C Homo INTERGENIC
SBS Chr6 28809274 A-C Homo INTRON
SBS Chr7 1355295 G-T Hetero INTERGENIC
SBS Chr7 6999274 T-A Homo INTRON
SBS Chr7 12155431 G-A Homo INTERGENIC
SBS Chr7 25656871 T-C Homo INTERGENIC
SBS Chr8 4825560 A-G Hetero INTERGENIC
SBS Chr8 6719247 C-T Hetero INTERGENIC
SBS Chr8 23874195 G-A Hetero INTRON
SBS Chr9 2128938 C-T Homo INTERGENIC
SBS Chr9 8827187 C-T Homo INTERGENIC
SBS Chr9 10841604 A-T Hetero INTRON
SBS Chr9 21612462 C-T Homo INTERGENIC
SBS Chr10 633374 C-T Hetero INTERGENIC
SBS Chr11 1121157 T-C Homo INTERGENIC
SBS Chr11 12619289 T-G Hetero INTERGENIC
SBS Chr11 26849375 G-A Hetero INTERGENIC
SBS Chr12 19689115 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 181202 181203 1
Deletion Chr8 627005 627014 9
Deletion Chr3 4540761 4540771 10
Deletion Chr2 5987829 5987838 9
Deletion Chr11 7172063 7172070 7
Deletion Chr5 10770454 10770465 11
Deletion Chr8 12418556 12418559 3
Deletion Chr5 13318087 13318096 9
Deletion Chr7 14693419 14693421 2
Deletion Chr4 15666150 15666155 5
Deletion Chr4 15851629 15851645 16
Deletion Chr5 21010272 21010276 4 OsKitaake05g168600
Deletion Chr3 25934949 25934956 7
Deletion Chr3 32962163 32962166 3
Deletion Chr1 35621244 35621249 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 16811085 16811088 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8192398	C-A	Hetero	INTRON
SBS	Chr1	8192399	C-T	Hetero	INTRON
SBS	Chr1	19387499	A-C	Hetero	INTERGENIC
SBS	Chr1	30186833	C-A	Homo	INTERGENIC
SBS	Chr1	33208523	A-G	Homo	INTRON
SBS	Chr1	39521883	C-A	Hetero	INTERGENIC
SBS	Chr2	4232980	T-C	Homo	INTERGENIC
SBS	Chr2	5821835	C-A	Homo	INTRON
SBS	Chr2	5821836	A-T	Homo	INTRON
SBS	Chr2	8431561	C-A	Homo	INTERGENIC
SBS	Chr2	14473219	T-A	Hetero	INTERGENIC
SBS	Chr2	20648247	T-C	Hetero	INTERGENIC
SBS	Chr2	21864858	T-G	Hetero	INTRON
SBS	Chr2	31752842	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	13544496	A-C	Hetero	INTERGENIC
SBS	Chr3	20184667	G-A	Hetero	INTERGENIC
SBS	Chr3	20218966	T-G	Hetero	INTERGENIC
SBS	Chr3	21071636	G-A	Hetero	INTERGENIC
SBS	Chr4	3709541	G-T	Hetero	INTERGENIC
SBS	Chr6	3180720	G-C	Hetero	INTERGENIC
SBS	Chr6	10973305	G-A	Hetero	INTERGENIC
SBS	Chr6	27094709	T-C	Homo	INTERGENIC
SBS	Chr6	28809274	A-C	Homo	INTRON
SBS	Chr7	1355295	G-T	Hetero	INTERGENIC
SBS	Chr7	6999274	T-A	Homo	INTRON
SBS	Chr7	12155431	G-A	Homo	INTERGENIC
SBS	Chr7	25656871	T-C	Homo	INTERGENIC
SBS	Chr8	4825560	A-G	Hetero	INTERGENIC
SBS	Chr8	6719247	C-T	Hetero	INTERGENIC
SBS	Chr8	23874195	G-A	Hetero	INTRON
SBS	Chr9	2128938	C-T	Homo	INTERGENIC
SBS	Chr9	8827187	C-T	Homo	INTERGENIC
SBS	Chr9	10841604	A-T	Hetero	INTRON
SBS	Chr9	21612462	C-T	Homo	INTERGENIC
SBS	Chr10	633374	C-T	Hetero	INTERGENIC
SBS	Chr11	1121157	T-C	Homo	INTERGENIC
SBS	Chr11	12619289	T-G	Hetero	INTERGENIC
SBS	Chr11	26849375	G-A	Hetero	INTERGENIC
SBS	Chr12	19689115	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	181202	181203	1
Deletion	Chr8	627005	627014	9
Deletion	Chr3	4540761	4540771	10
Deletion	Chr2	5987829	5987838	9
Deletion	Chr11	7172063	7172070	7
Deletion	Chr5	10770454	10770465	11
Deletion	Chr8	12418556	12418559	3
Deletion	Chr5	13318087	13318096	9
Deletion	Chr7	14693419	14693421	2
Deletion	Chr4	15666150	15666155	5
Deletion	Chr4	15851629	15851645	16
Deletion	Chr5	21010272	21010276	4	OsKitaake05g168600
Deletion	Chr3	25934949	25934956	7
Deletion	Chr3	32962163	32962166	3
Deletion	Chr1	35621244	35621249	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes