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Mutant Information

Mutant Name	FN2392 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2392 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1491609 C-T Homo INTERGENIC
SBS Chr1 11797132 C-A Hetero INTERGENIC
SBS Chr1 13229638 C-T Hetero INTERGENIC
SBS Chr1 35462257 A-G Hetero INTRON
SBS Chr1 40961979 T-C Hetero INTERGENIC
SBS Chr2 5631490 G-A Hetero INTERGENIC
SBS Chr2 23096351 A-G Hetero INTERGENIC
SBS Chr3 50218 G-A Homo INTERGENIC
SBS Chr3 13056469 T-C Hetero INTERGENIC
SBS Chr3 16549506 C-A Hetero INTERGENIC
SBS Chr3 23243163 C-T Hetero INTERGENIC
SBS Chr4 2999975 G-A Hetero INTERGENIC
SBS Chr4 2999977 G-A Hetero INTERGENIC
SBS Chr4 2999982 G-A Hetero INTERGENIC
SBS Chr4 3519701 G-A Hetero INTERGENIC
SBS Chr4 8270179 T-C Hetero INTERGENIC
SBS Chr4 18099039 T-A Hetero INTERGENIC
SBS Chr4 20154861 C-T Hetero INTRON
SBS Chr5 6803754 G-C Homo INTRON
SBS Chr5 19083272 G-A Hetero INTERGENIC
SBS Chr5 20008799 C-T Hetero INTERGENIC
SBS Chr6 12285991 T-C Hetero INTERGENIC
SBS Chr6 12576809 T-C Hetero INTRON
SBS Chr6 14799660 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g149600
SBS Chr7 13470669 G-A Hetero INTERGENIC
SBS Chr7 28737171 C-A Homo INTERGENIC
SBS Chr8 7291047 C-T Homo INTERGENIC
SBS Chr8 10798282 G-C Hetero INTERGENIC
SBS Chr8 21886704 C-T Hetero INTERGENIC
SBS Chr8 23132968 T-C Hetero INTERGENIC
SBS Chr8 26481598 A-T Hetero INTERGENIC
SBS Chr8 26481599 C-T Hetero INTERGENIC
SBS Chr9 9274732 T-C Hetero INTERGENIC
SBS Chr10 1087175 C-T Homo INTERGENIC
SBS Chr10 3322856 T-A Hetero INTERGENIC
SBS Chr10 11648667 T-C Hetero INTERGENIC
SBS Chr10 11648668 A-C Hetero INTERGENIC
SBS Chr11 15321970 A-T Homo INTERGENIC
SBS Chr11 23047349 A-G Hetero INTERGENIC
SBS Chr12 1082602 G-T Hetero UTR_3_PRIME
SBS Chr12 2540888 C-A Hetero INTRON
SBS Chr12 20547290 A-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3928852 3928856 4
Deletion Chr4 4332001 4990000 657999 12
Deletion Chr3 4547195 4547198 3
Deletion Chr9 5133749 5133752 3
Deletion Chr11 5665602 5665604 2
Deletion Chr4 6065474 6065477 3
Deletion Chr3 6339916 6339924 8
Deletion Chr8 12232650 12232657 7
Deletion Chr4 13616431 13616434 3
Deletion Chr2 15306305 15306313 8
Deletion Chr6 20295001 20337000 41999 6
Deletion Chr6 20343001 20689000 345999 28
Deletion Chr8 27312289 27312292 3
Deletion Chr7 28302038 28302049 11

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 28056109 28056112 2
Insertion Chr5 29314955 29314958 2
Insertion Chr8 433521 433524 2
Insertion Chr11 19487709 19487712 2
Insertion Chr11 23329670 23329673 2
Insertion Chr1 25385548 25385551 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 10377870 11309521
Inversion Chr10 10377872 11309520

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 23050027 Chr2 34991836 OsKitaake02g365500
Translocation Chr8 26355668 Chr2 34991855 2
Translocation Chr8 26356590 Chr5 23050017 OsKitaake08g211400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1491609	C-T	Homo	INTERGENIC
SBS	Chr1	11797132	C-A	Hetero	INTERGENIC
SBS	Chr1	13229638	C-T	Hetero	INTERGENIC
SBS	Chr1	35462257	A-G	Hetero	INTRON
SBS	Chr1	40961979	T-C	Hetero	INTERGENIC
SBS	Chr2	5631490	G-A	Hetero	INTERGENIC
SBS	Chr2	23096351	A-G	Hetero	INTERGENIC
SBS	Chr3	50218	G-A	Homo	INTERGENIC
SBS	Chr3	13056469	T-C	Hetero	INTERGENIC
SBS	Chr3	16549506	C-A	Hetero	INTERGENIC
SBS	Chr3	23243163	C-T	Hetero	INTERGENIC
SBS	Chr4	2999975	G-A	Hetero	INTERGENIC
SBS	Chr4	2999977	G-A	Hetero	INTERGENIC
SBS	Chr4	2999982	G-A	Hetero	INTERGENIC
SBS	Chr4	3519701	G-A	Hetero	INTERGENIC
SBS	Chr4	8270179	T-C	Hetero	INTERGENIC
SBS	Chr4	18099039	T-A	Hetero	INTERGENIC
SBS	Chr4	20154861	C-T	Hetero	INTRON
SBS	Chr5	6803754	G-C	Homo	INTRON
SBS	Chr5	19083272	G-A	Hetero	INTERGENIC
SBS	Chr5	20008799	C-T	Hetero	INTERGENIC
SBS	Chr6	12285991	T-C	Hetero	INTERGENIC
SBS	Chr6	12576809	T-C	Hetero	INTRON
SBS	Chr6	14799660	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g149600
SBS	Chr7	13470669	G-A	Hetero	INTERGENIC
SBS	Chr7	28737171	C-A	Homo	INTERGENIC
SBS	Chr8	7291047	C-T	Homo	INTERGENIC
SBS	Chr8	10798282	G-C	Hetero	INTERGENIC
SBS	Chr8	21886704	C-T	Hetero	INTERGENIC
SBS	Chr8	23132968	T-C	Hetero	INTERGENIC
SBS	Chr8	26481598	A-T	Hetero	INTERGENIC
SBS	Chr8	26481599	C-T	Hetero	INTERGENIC
SBS	Chr9	9274732	T-C	Hetero	INTERGENIC
SBS	Chr10	1087175	C-T	Homo	INTERGENIC
SBS	Chr10	3322856	T-A	Hetero	INTERGENIC
SBS	Chr10	11648667	T-C	Hetero	INTERGENIC
SBS	Chr10	11648668	A-C	Hetero	INTERGENIC
SBS	Chr11	15321970	A-T	Homo	INTERGENIC
SBS	Chr11	23047349	A-G	Hetero	INTERGENIC
SBS	Chr12	1082602	G-T	Hetero	UTR_3_PRIME
SBS	Chr12	2540888	C-A	Hetero	INTRON
SBS	Chr12	20547290	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3928852	3928856	4
Deletion	Chr4	4332001	4990000	657999	12
Deletion	Chr3	4547195	4547198	3
Deletion	Chr9	5133749	5133752	3
Deletion	Chr11	5665602	5665604	2
Deletion	Chr4	6065474	6065477	3
Deletion	Chr3	6339916	6339924	8
Deletion	Chr8	12232650	12232657	7
Deletion	Chr4	13616431	13616434	3
Deletion	Chr2	15306305	15306313	8
Deletion	Chr6	20295001	20337000	41999	6
Deletion	Chr6	20343001	20689000	345999	28
Deletion	Chr8	27312289	27312292	3
Deletion	Chr7	28302038	28302049	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	10377870	11309521
Inversion	Chr10	10377872	11309520

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes