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Mutant Information

Mutant Name	FN2395 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2395 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4790095 C-T Hetero INTERGENIC
SBS Chr1 14240796 A-C Homo INTERGENIC
SBS Chr1 16136529 G-A Homo INTERGENIC
SBS Chr1 16145341 A-C Homo INTERGENIC
SBS Chr1 27861318 G-A Hetero INTERGENIC
SBS Chr1 33576499 G-A Hetero INTRON
SBS Chr2 9058280 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g113200
SBS Chr2 14077695 G-A Hetero INTERGENIC
SBS Chr2 20784766 A-C Hetero INTRON
SBS Chr2 23932486 T-G Hetero INTRON
SBS Chr2 27640783 T-C Hetero INTERGENIC
SBS Chr2 32514759 A-T Hetero INTERGENIC
SBS Chr2 33385163 G-A Hetero INTERGENIC
SBS Chr2 37002437 C-T Hetero START_GAINED
SBS Chr3 1590366 C-G Hetero INTRON
SBS Chr3 12672932 T-A Homo INTRON
SBS Chr3 13606413 G-A Hetero INTERGENIC
SBS Chr3 27423760 C-T Hetero INTERGENIC
SBS Chr3 28770341 C-T Hetero INTERGENIC
SBS Chr4 1633664 C-A Hetero INTERGENIC
SBS Chr4 21844812 G-A Homo INTERGENIC
SBS Chr4 26395236 A-C Hetero INTERGENIC
SBS Chr4 28689073 A-G Hetero INTERGENIC
SBS Chr5 903806 T-C Hetero INTERGENIC
SBS Chr5 18725551 G-C Hetero INTERGENIC
SBS Chr6 15029081 A-G Hetero INTERGENIC
SBS Chr6 28003098 G-A Hetero INTERGENIC
SBS Chr7 3750232 A-T Homo INTERGENIC
SBS Chr7 15632760 C-T Hetero INTERGENIC
SBS Chr7 16869798 G-T Hetero INTERGENIC
SBS Chr7 20407848 T-C Hetero INTERGENIC
SBS Chr8 14612536 G-A Homo INTERGENIC
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr8 27190949 T-C Homo UTR_3_PRIME
SBS Chr9 5504543 G-A Homo INTERGENIC
SBS Chr9 7402659 G-A Hetero UTR_3_PRIME
SBS Chr10 6715070 T-C Hetero INTERGENIC
SBS Chr10 7882186 C-A Hetero INTERGENIC
SBS Chr10 7882231 G-A Hetero INTERGENIC
SBS Chr10 9906783 A-T Hetero INTERGENIC
SBS Chr10 23008682 G-A Hetero INTERGENIC
SBS Chr11 4311918 G-T Homo INTERGENIC
SBS Chr11 5372716 C-G Homo INTERGENIC
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr11 15950244 T-G Homo INTERGENIC
SBS Chr12 692652 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 597668 597680 12
Deletion Chr4 7191001 7579000 387999 14
Deletion Chr10 7373773 7373780 7
Deletion Chr4 7589001 7849000 259999 20
Deletion Chr4 7856001 7974000 117999 11
Deletion Chr5 9312856 9312860 4
Deletion Chr11 20421729 20421730 1
Deletion Chr5 22319169 22319173 4
Deletion Chr7 23462413 23462434 21
Deletion Chr6 26954378 26954395 17 OsKitaake06g241200
Deletion Chr1 34131451 34131452 1
Deletion Chr2 36101592 36101593 1
Deletion Chr1 41046210 41046215 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14881151 14881154 2
Insertion Chr3 34627405 34627408 2
Insertion Chr4 1886210 1886213 2
Insertion Chr7 12683093 12683097 3
Insertion Chr7 18907499 18907502 2
Insertion Chr11 11112781 11112784 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 269244 468229 OsKitaake01g003800
Inversion Chr1 407200 468222 OsKitaake01g005700
Inversion Chr11 810126 816079 OsKitaake11g010500
Inversion Chr11 810143 816099 OsKitaake11g010500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 20335000 Chr2 33101824
Translocation Chr5 20335254 Chr2 33101846 OsKitaake05g161900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4790095	C-T	Hetero	INTERGENIC
SBS	Chr1	14240796	A-C	Homo	INTERGENIC
SBS	Chr1	16136529	G-A	Homo	INTERGENIC
SBS	Chr1	16145341	A-C	Homo	INTERGENIC
SBS	Chr1	27861318	G-A	Hetero	INTERGENIC
SBS	Chr1	33576499	G-A	Hetero	INTRON
SBS	Chr2	9058280	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g113200
SBS	Chr2	14077695	G-A	Hetero	INTERGENIC
SBS	Chr2	20784766	A-C	Hetero	INTRON
SBS	Chr2	23932486	T-G	Hetero	INTRON
SBS	Chr2	27640783	T-C	Hetero	INTERGENIC
SBS	Chr2	32514759	A-T	Hetero	INTERGENIC
SBS	Chr2	33385163	G-A	Hetero	INTERGENIC
SBS	Chr2	37002437	C-T	Hetero	START_GAINED
SBS	Chr3	1590366	C-G	Hetero	INTRON
SBS	Chr3	12672932	T-A	Homo	INTRON
SBS	Chr3	13606413	G-A	Hetero	INTERGENIC
SBS	Chr3	27423760	C-T	Hetero	INTERGENIC
SBS	Chr3	28770341	C-T	Hetero	INTERGENIC
SBS	Chr4	1633664	C-A	Hetero	INTERGENIC
SBS	Chr4	21844812	G-A	Homo	INTERGENIC
SBS	Chr4	26395236	A-C	Hetero	INTERGENIC
SBS	Chr4	28689073	A-G	Hetero	INTERGENIC
SBS	Chr5	903806	T-C	Hetero	INTERGENIC
SBS	Chr5	18725551	G-C	Hetero	INTERGENIC
SBS	Chr6	15029081	A-G	Hetero	INTERGENIC
SBS	Chr6	28003098	G-A	Hetero	INTERGENIC
SBS	Chr7	3750232	A-T	Homo	INTERGENIC
SBS	Chr7	15632760	C-T	Hetero	INTERGENIC
SBS	Chr7	16869798	G-T	Hetero	INTERGENIC
SBS	Chr7	20407848	T-C	Hetero	INTERGENIC
SBS	Chr8	14612536	G-A	Homo	INTERGENIC
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr8	27190949	T-C	Homo	UTR_3_PRIME
SBS	Chr9	5504543	G-A	Homo	INTERGENIC
SBS	Chr9	7402659	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	6715070	T-C	Hetero	INTERGENIC
SBS	Chr10	7882186	C-A	Hetero	INTERGENIC
SBS	Chr10	7882231	G-A	Hetero	INTERGENIC
SBS	Chr10	9906783	A-T	Hetero	INTERGENIC
SBS	Chr10	23008682	G-A	Hetero	INTERGENIC
SBS	Chr11	4311918	G-T	Homo	INTERGENIC
SBS	Chr11	5372716	C-G	Homo	INTERGENIC
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr11	15950244	T-G	Homo	INTERGENIC
SBS	Chr12	692652	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	597668	597680	12
Deletion	Chr4	7191001	7579000	387999	14
Deletion	Chr10	7373773	7373780	7
Deletion	Chr4	7589001	7849000	259999	20
Deletion	Chr4	7856001	7974000	117999	11
Deletion	Chr5	9312856	9312860	4
Deletion	Chr11	20421729	20421730	1
Deletion	Chr5	22319169	22319173	4
Deletion	Chr7	23462413	23462434	21
Deletion	Chr6	26954378	26954395	17	OsKitaake06g241200
Deletion	Chr1	34131451	34131452	1
Deletion	Chr2	36101592	36101593	1
Deletion	Chr1	41046210	41046215	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	269244	468229	OsKitaake01g003800
Inversion	Chr1	407200	468222	OsKitaake01g005700
Inversion	Chr11	810126	816079	OsKitaake11g010500
Inversion	Chr11	810143	816099	OsKitaake11g010500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes