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Mutant Information

Mutant Name	FN2397 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2397 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5506032 G-A Homo INTRON
SBS Chr1 6827723 C-A Hetero INTERGENIC
SBS Chr1 12617419 G-A Hetero INTERGENIC
SBS Chr1 13041042 G-A Hetero INTERGENIC
SBS Chr1 21748081 G-T Hetero INTERGENIC
SBS Chr1 24222733 G-A Hetero INTERGENIC
SBS Chr2 14076808 T-G Homo INTERGENIC
SBS Chr2 26556398 G-T Hetero INTERGENIC
SBS Chr2 30795471 G-A Hetero INTERGENIC
SBS Chr2 36044206 T-C Hetero INTERGENIC
SBS Chr3 12269913 G-A Hetero INTRON
SBS Chr3 12846640 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g172700
SBS Chr3 14653917 A-G Hetero INTERGENIC
SBS Chr3 15827426 C-T Hetero INTERGENIC
SBS Chr3 22420515 C-G Hetero INTERGENIC
SBS Chr3 30848998 G-C Homo NON_SYNONYMOUS_CODING OsKitaake03g323700
SBS Chr3 35046800 A-C Homo INTERGENIC
SBS Chr4 1345455 G-A Hetero INTERGENIC
SBS Chr4 1345456 A-C Hetero INTERGENIC
SBS Chr4 22096236 C-G Hetero INTERGENIC
SBS Chr4 28917720 C-T Hetero INTERGENIC
SBS Chr4 36725294 C-A Hetero INTERGENIC
SBS Chr5 29116673 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g275500
SBS Chr6 20684158 C-T Hetero INTERGENIC
SBS Chr6 23011805 C-T Homo INTERGENIC
SBS Chr6 24068541 A-C Homo INTERGENIC
SBS Chr6 27202458 A-T Homo INTERGENIC
SBS Chr6 31034845 G-A Hetero INTERGENIC
SBS Chr7 1216517 A-G Hetero INTERGENIC
SBS Chr7 10484801 G-A Hetero INTERGENIC
SBS Chr8 1791718 A-T Hetero INTERGENIC
SBS Chr8 13102970 A-T Hetero INTERGENIC
SBS Chr9 11659828 G-A Hetero INTRON
SBS Chr9 21350415 G-A Homo INTERGENIC
SBS Chr11 6283250 C-G Homo INTERGENIC
SBS Chr11 7397967 C-A Homo INTERGENIC
SBS Chr11 15217486 C-T Homo INTERGENIC
SBS Chr11 20733327 G-T Hetero INTERGENIC
SBS Chr11 20819644 A-G Hetero INTRON
SBS Chr12 1096363 G-A Homo INTERGENIC
SBS Chr12 3930676 C-T Hetero INTERGENIC
SBS Chr12 4270395 C-T Hetero INTERGENIC
SBS Chr12 5117459 G-A Hetero INTERGENIC
SBS Chr12 8707757 G-T Hetero INTRON
SBS Chr12 20701661 A-G Hetero INTRON
SBS Chr12 22161409 A-G Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 92075 92077 2
Deletion Chr1 8721721 8721723 2
Deletion Chr8 9957670 9957672 2
Deletion Chr7 12462616 12462636 20 OsKitaake07g111400
Deletion Chr3 13526109 13526115 6
Deletion Chr1 16543627 16543630 3
Deletion Chr10 17329800 17329801 1
Deletion Chr12 19499411 19499418 7
Deletion Chr7 19791834 19791838 4
Deletion Chr2 21244974 21244975 1
Deletion Chr6 21861207 21861223 16
Deletion Chr12 22688053 22688055 2
Deletion Chr12 22742001 22752000 9999 3
Deletion Chr6 23096429 23096437 8
Deletion Chr8 23990546 23990551 5
Deletion Chr7 24233368 24233376 8
Deletion Chr3 31569935 31569937 2
Deletion Chr3 35712065 35712068 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 6797950 6797954 3
Insertion Chr10 4780822 4780825 2
Insertion Chr11 3043183 3043191 7
Insertion Chr11 15199013 15199016 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 22000294 22120392 OsKitaake12g174200
Inversion Chr12 22120421 22752122 2
Inversion Chr1 26030183 26697373
Inversion Chr1 26030368 26697379
Inversion Chr1 26622706 26684858 OsKitaake01g258800
Inversion Chr1 26622716 26893066 OsKitaake01g258800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5506032	G-A	Homo	INTRON
SBS	Chr1	6827723	C-A	Hetero	INTERGENIC
SBS	Chr1	12617419	G-A	Hetero	INTERGENIC
SBS	Chr1	13041042	G-A	Hetero	INTERGENIC
SBS	Chr1	21748081	G-T	Hetero	INTERGENIC
SBS	Chr1	24222733	G-A	Hetero	INTERGENIC
SBS	Chr2	14076808	T-G	Homo	INTERGENIC
SBS	Chr2	26556398	G-T	Hetero	INTERGENIC
SBS	Chr2	30795471	G-A	Hetero	INTERGENIC
SBS	Chr2	36044206	T-C	Hetero	INTERGENIC
SBS	Chr3	12269913	G-A	Hetero	INTRON
SBS	Chr3	12846640	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g172700
SBS	Chr3	14653917	A-G	Hetero	INTERGENIC
SBS	Chr3	15827426	C-T	Hetero	INTERGENIC
SBS	Chr3	22420515	C-G	Hetero	INTERGENIC
SBS	Chr3	30848998	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g323700
SBS	Chr3	35046800	A-C	Homo	INTERGENIC
SBS	Chr4	1345455	G-A	Hetero	INTERGENIC
SBS	Chr4	1345456	A-C	Hetero	INTERGENIC
SBS	Chr4	22096236	C-G	Hetero	INTERGENIC
SBS	Chr4	28917720	C-T	Hetero	INTERGENIC
SBS	Chr4	36725294	C-A	Hetero	INTERGENIC
SBS	Chr5	29116673	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g275500
SBS	Chr6	20684158	C-T	Hetero	INTERGENIC
SBS	Chr6	23011805	C-T	Homo	INTERGENIC
SBS	Chr6	24068541	A-C	Homo	INTERGENIC
SBS	Chr6	27202458	A-T	Homo	INTERGENIC
SBS	Chr6	31034845	G-A	Hetero	INTERGENIC
SBS	Chr7	1216517	A-G	Hetero	INTERGENIC
SBS	Chr7	10484801	G-A	Hetero	INTERGENIC
SBS	Chr8	1791718	A-T	Hetero	INTERGENIC
SBS	Chr8	13102970	A-T	Hetero	INTERGENIC
SBS	Chr9	11659828	G-A	Hetero	INTRON
SBS	Chr9	21350415	G-A	Homo	INTERGENIC
SBS	Chr11	6283250	C-G	Homo	INTERGENIC
SBS	Chr11	7397967	C-A	Homo	INTERGENIC
SBS	Chr11	15217486	C-T	Homo	INTERGENIC
SBS	Chr11	20733327	G-T	Hetero	INTERGENIC
SBS	Chr11	20819644	A-G	Hetero	INTRON
SBS	Chr12	1096363	G-A	Homo	INTERGENIC
SBS	Chr12	3930676	C-T	Hetero	INTERGENIC
SBS	Chr12	4270395	C-T	Hetero	INTERGENIC
SBS	Chr12	5117459	G-A	Hetero	INTERGENIC
SBS	Chr12	8707757	G-T	Hetero	INTRON
SBS	Chr12	20701661	A-G	Hetero	INTRON
SBS	Chr12	22161409	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	92075	92077	2
Deletion	Chr1	8721721	8721723	2
Deletion	Chr8	9957670	9957672	2
Deletion	Chr7	12462616	12462636	20	OsKitaake07g111400
Deletion	Chr3	13526109	13526115	6
Deletion	Chr1	16543627	16543630	3
Deletion	Chr10	17329800	17329801	1
Deletion	Chr12	19499411	19499418	7
Deletion	Chr7	19791834	19791838	4
Deletion	Chr2	21244974	21244975	1
Deletion	Chr6	21861207	21861223	16
Deletion	Chr12	22688053	22688055	2
Deletion	Chr12	22742001	22752000	9999	3
Deletion	Chr6	23096429	23096437	8
Deletion	Chr8	23990546	23990551	5
Deletion	Chr7	24233368	24233376	8
Deletion	Chr3	31569935	31569937	2
Deletion	Chr3	35712065	35712068	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	22000294	22120392	OsKitaake12g174200
Inversion	Chr12	22120421	22752122	2
Inversion	Chr1	26030183	26697373
Inversion	Chr1	26030368	26697379
Inversion	Chr1	26622706	26684858	OsKitaake01g258800
Inversion	Chr1	26622716	26893066	OsKitaake01g258800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes