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Mutant Information

Mutant Name	FN2398 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2398 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11739794 C-G Homo INTERGENIC
SBS Chr1 17462675 G-A Hetero INTERGENIC
SBS Chr1 30243840 T-A Hetero INTRON
SBS Chr1 30243841 A-C Hetero INTRON
SBS Chr1 30709991 C-T Hetero INTERGENIC
SBS Chr2 500048 A-T Hetero INTERGENIC
SBS Chr2 4465616 C-T Hetero INTRON
SBS Chr2 10335068 G-A Hetero INTRON
SBS Chr2 17450043 C-T Homo INTRON
SBS Chr2 25554818 G-C Hetero INTERGENIC
SBS Chr2 35991437 G-T Hetero INTERGENIC
SBS Chr3 12731458 G-A Hetero INTERGENIC
SBS Chr3 12865955 A-T Hetero INTERGENIC
SBS Chr3 19507871 T-G Hetero INTERGENIC
SBS Chr3 30678922 A-T Hetero INTERGENIC
SBS Chr4 3413155 C-T Hetero INTERGENIC
SBS Chr4 4449805 A-G Hetero INTERGENIC
SBS Chr4 17106227 G-A Hetero INTERGENIC
SBS Chr4 32484247 G-A Hetero INTERGENIC
SBS Chr4 33205996 G-A Hetero INTRON
SBS Chr4 35843670 C-T Hetero INTERGENIC
SBS Chr5 5565114 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g059600
SBS Chr5 5565115 C-A Hetero SYNONYMOUS_CODING
SBS Chr5 29410243 T-A Homo INTERGENIC
SBS Chr5 29410244 G-A Homo INTERGENIC
SBS Chr6 1028946 T-C Hetero INTERGENIC
SBS Chr6 4843210 A-C Hetero INTERGENIC
SBS Chr6 6715693 A-C Hetero INTERGENIC
SBS Chr6 11119125 A-G Hetero INTERGENIC
SBS Chr6 11197095 T-C Hetero INTERGENIC
SBS Chr6 21601537 C-A Hetero INTERGENIC
SBS Chr7 14667998 T-A Hetero INTERGENIC
SBS Chr8 9848123 T-C Homo INTERGENIC
SBS Chr8 24952256 C-G Hetero INTERGENIC
SBS Chr10 5488847 C-T Homo INTERGENIC
SBS Chr10 14101770 C-T Hetero INTERGENIC
SBS Chr11 10846386 C-A Homo INTERGENIC
SBS Chr11 11184430 A-C Hetero INTERGENIC
SBS Chr11 17544422 A-G Hetero SYNONYMOUS_CODING
SBS Chr11 18136657 A-T Hetero INTERGENIC
SBS Chr11 24901261 A-T Hetero INTERGENIC
SBS Chr12 15958532 T-C Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1243001 1370000 126999 7
Deletion Chr7 6954547 6954551 4
Deletion Chr3 8847001 8865000 17999 2
Deletion Chr5 12416578 12416579 1
Deletion Chr1 13918936 13918947 11
Deletion Chr12 14680891 14680893 2
Deletion Chr4 20678304 20678306 2
Deletion Chr5 20767486 20767491 5
Deletion Chr7 21769989 21769990 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 35778867 35778872 4
Insertion Chr4 21052760 21052768 7
Insertion Chr5 5595406 5595409 2
Insertion Chr5 13883899 13883902 2
Insertion Chr8 2699286 2699288 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 9420893 10036839
Inversion Chr5 10036856 10090933

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 21601774 Chr2 24956208

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11739794	C-G	Homo	INTERGENIC
SBS	Chr1	17462675	G-A	Hetero	INTERGENIC
SBS	Chr1	30243840	T-A	Hetero	INTRON
SBS	Chr1	30243841	A-C	Hetero	INTRON
SBS	Chr1	30709991	C-T	Hetero	INTERGENIC
SBS	Chr2	500048	A-T	Hetero	INTERGENIC
SBS	Chr2	4465616	C-T	Hetero	INTRON
SBS	Chr2	10335068	G-A	Hetero	INTRON
SBS	Chr2	17450043	C-T	Homo	INTRON
SBS	Chr2	25554818	G-C	Hetero	INTERGENIC
SBS	Chr2	35991437	G-T	Hetero	INTERGENIC
SBS	Chr3	12731458	G-A	Hetero	INTERGENIC
SBS	Chr3	12865955	A-T	Hetero	INTERGENIC
SBS	Chr3	19507871	T-G	Hetero	INTERGENIC
SBS	Chr3	30678922	A-T	Hetero	INTERGENIC
SBS	Chr4	3413155	C-T	Hetero	INTERGENIC
SBS	Chr4	4449805	A-G	Hetero	INTERGENIC
SBS	Chr4	17106227	G-A	Hetero	INTERGENIC
SBS	Chr4	32484247	G-A	Hetero	INTERGENIC
SBS	Chr4	33205996	G-A	Hetero	INTRON
SBS	Chr4	35843670	C-T	Hetero	INTERGENIC
SBS	Chr5	5565114	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g059600
SBS	Chr5	5565115	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	29410243	T-A	Homo	INTERGENIC
SBS	Chr5	29410244	G-A	Homo	INTERGENIC
SBS	Chr6	1028946	T-C	Hetero	INTERGENIC
SBS	Chr6	4843210	A-C	Hetero	INTERGENIC
SBS	Chr6	6715693	A-C	Hetero	INTERGENIC
SBS	Chr6	11119125	A-G	Hetero	INTERGENIC
SBS	Chr6	11197095	T-C	Hetero	INTERGENIC
SBS	Chr6	21601537	C-A	Hetero	INTERGENIC
SBS	Chr7	14667998	T-A	Hetero	INTERGENIC
SBS	Chr8	9848123	T-C	Homo	INTERGENIC
SBS	Chr8	24952256	C-G	Hetero	INTERGENIC
SBS	Chr10	5488847	C-T	Homo	INTERGENIC
SBS	Chr10	14101770	C-T	Hetero	INTERGENIC
SBS	Chr11	10846386	C-A	Homo	INTERGENIC
SBS	Chr11	11184430	A-C	Hetero	INTERGENIC
SBS	Chr11	17544422	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	18136657	A-T	Hetero	INTERGENIC
SBS	Chr11	24901261	A-T	Hetero	INTERGENIC
SBS	Chr12	15958532	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1243001	1370000	126999	7
Deletion	Chr7	6954547	6954551	4
Deletion	Chr3	8847001	8865000	17999	2
Deletion	Chr5	12416578	12416579	1
Deletion	Chr1	13918936	13918947	11
Deletion	Chr12	14680891	14680893	2
Deletion	Chr4	20678304	20678306	2
Deletion	Chr5	20767486	20767491	5
Deletion	Chr7	21769989	21769990	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	9420893	10036839
Inversion	Chr5	10036856	10090933

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Variant Type

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Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes