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Mutant Information

Mutant Name	FN2399 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2399 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18147525 G-A Hetero INTERGENIC
SBS Chr1 22705317 A-G Homo INTRON
SBS Chr1 28997140 T-C Hetero UTR_3_PRIME
SBS Chr2 9450508 G-T Hetero INTERGENIC
SBS Chr2 35891568 A-G Hetero INTERGENIC
SBS Chr3 1900797 A-T Hetero INTRON
SBS Chr3 7147672 C-A Homo INTERGENIC
SBS Chr3 15944462 C-G Hetero INTRON
SBS Chr3 22357816 T-C Homo INTRON
SBS Chr3 32195569 C-T Hetero INTERGENIC
SBS Chr3 36109910 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g399100
SBS Chr4 33079850 C-T Hetero UTR_3_PRIME
SBS Chr5 6944141 G-T Hetero INTERGENIC
SBS Chr5 16379831 G-A Hetero INTERGENIC
SBS Chr5 21252114 C-T Hetero INTRON
SBS Chr7 14818790 C-T Hetero INTERGENIC
SBS Chr8 1705913 C-T Hetero SPLICE_SITE_DONOR OsKitaake08g022000
SBS Chr8 19301215 C-T Homo INTERGENIC
SBS Chr8 19301219 C-T Homo INTERGENIC
SBS Chr9 16142340 T-C Homo INTRON
SBS Chr9 22132838 A-T Homo NON_SYNONYMOUS_CODING OsKitaake09g199300
SBS Chr9 22132847 A-G Homo NON_SYNONYMOUS_CODING OsKitaake09g199300
SBS Chr10 4748207 G-A Hetero INTERGENIC
SBS Chr11 4372463 C-T Hetero INTERGENIC
SBS Chr11 8803006 G-A Hetero INTERGENIC
SBS Chr11 11181000 C-A Hetero INTERGENIC
SBS Chr11 15121422 A-G Hetero INTERGENIC
SBS Chr11 15121425 G-A Hetero INTERGENIC
SBS Chr11 23488309 A-T Homo INTERGENIC
SBS Chr11 25964087 G-C Homo UTR_5_PRIME
SBS Chr11 25964130 G-A Homo INTERGENIC
SBS Chr11 25964131 G-A Homo INTERGENIC
SBS Chr11 28414425 G-A Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 10238818 10238819 1
Deletion Chr3 11481001 11539000 57999 6
Deletion Chr8 15270872 15270881 9
Deletion Chr9 20159365 20159368 3
Deletion Chr5 22549523 22549528 5
Deletion Chr5 23526390 23526395 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 22677245 22677248 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 1265532 1827426 OsKitaake03g019400
Inversion Chr3 1279298 1313620
Inversion Chr12 5869205 6518282 2
Inversion Chr12 5869930 6518286 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 1271492 Chr1 5537603 2
Translocation Chr3 1279315 Chr1 5537613 OsKitaake01g071300
Translocation Chr12 5869224 Chr3 2351054 2
Translocation Chr12 8720075 Chr3 1828076 OsKitaake03g026100
Translocation Chr12 8720093 Chr3 1827442

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18147525	G-A	Hetero	INTERGENIC
SBS	Chr1	22705317	A-G	Homo	INTRON
SBS	Chr1	28997140	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	9450508	G-T	Hetero	INTERGENIC
SBS	Chr2	35891568	A-G	Hetero	INTERGENIC
SBS	Chr3	1900797	A-T	Hetero	INTRON
SBS	Chr3	7147672	C-A	Homo	INTERGENIC
SBS	Chr3	15944462	C-G	Hetero	INTRON
SBS	Chr3	22357816	T-C	Homo	INTRON
SBS	Chr3	32195569	C-T	Hetero	INTERGENIC
SBS	Chr3	36109910	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g399100
SBS	Chr4	33079850	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	6944141	G-T	Hetero	INTERGENIC
SBS	Chr5	16379831	G-A	Hetero	INTERGENIC
SBS	Chr5	21252114	C-T	Hetero	INTRON
SBS	Chr7	14818790	C-T	Hetero	INTERGENIC
SBS	Chr8	1705913	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake08g022000
SBS	Chr8	19301215	C-T	Homo	INTERGENIC
SBS	Chr8	19301219	C-T	Homo	INTERGENIC
SBS	Chr9	16142340	T-C	Homo	INTRON
SBS	Chr9	22132838	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g199300
SBS	Chr9	22132847	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g199300
SBS	Chr10	4748207	G-A	Hetero	INTERGENIC
SBS	Chr11	4372463	C-T	Hetero	INTERGENIC
SBS	Chr11	8803006	G-A	Hetero	INTERGENIC
SBS	Chr11	11181000	C-A	Hetero	INTERGENIC
SBS	Chr11	15121422	A-G	Hetero	INTERGENIC
SBS	Chr11	15121425	G-A	Hetero	INTERGENIC
SBS	Chr11	23488309	A-T	Homo	INTERGENIC
SBS	Chr11	25964087	G-C	Homo	UTR_5_PRIME
SBS	Chr11	25964130	G-A	Homo	INTERGENIC
SBS	Chr11	25964131	G-A	Homo	INTERGENIC
SBS	Chr11	28414425	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	10238818	10238819	1
Deletion	Chr3	11481001	11539000	57999	6
Deletion	Chr8	15270872	15270881	9
Deletion	Chr9	20159365	20159368	3
Deletion	Chr5	22549523	22549528	5
Deletion	Chr5	23526390	23526395	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1265532	1827426	OsKitaake03g019400
Inversion	Chr3	1279298	1313620
Inversion	Chr12	5869205	6518282	2
Inversion	Chr12	5869930	6518286	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes