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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN2401 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2401 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11779129 C-A Hetero INTERGENIC
SBS Chr1 30477233 G-T Homo SYNONYMOUS_CODING
SBS Chr1 43410678 T-A Homo NON_SYNONYMOUS_START
SBS Chr1 43838291 T-C Hetero INTERGENIC
SBS Chr3 5429303 T-A Homo INTERGENIC
SBS Chr3 14549442 T-G Homo INTRON
SBS Chr4 5600336 G-A Hetero INTERGENIC
SBS Chr4 7990585 C-T Homo UTR_3_PRIME
SBS Chr4 34669772 G-A Homo INTERGENIC
SBS Chr5 8600720 T-G Hetero INTERGENIC
SBS Chr6 3459579 A-G Hetero INTERGENIC
SBS Chr6 3477241 T-G Hetero UTR_3_PRIME
SBS Chr6 3477243 G-T Hetero UTR_3_PRIME
SBS Chr6 5529552 G-T Hetero INTERGENIC
SBS Chr6 13848394 T-G Hetero INTERGENIC
SBS Chr6 26879506 T-C Hetero INTERGENIC
SBS Chr7 5401095 T-C Homo INTERGENIC
SBS Chr7 7298479 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g082200
SBS Chr8 13074644 G-A Hetero INTERGENIC
SBS Chr8 13409757 C-A Hetero INTERGENIC
SBS Chr8 23004705 G-C Hetero INTERGENIC
SBS Chr8 25849573 G-A Hetero INTERGENIC
SBS Chr8 25849574 C-A Hetero INTERGENIC
SBS Chr8 25855600 T-A Hetero INTERGENIC
SBS Chr11 5916451 C-A Hetero INTRON
SBS Chr11 13393636 C-T Homo INTERGENIC
SBS Chr11 24063406 G-T Hetero INTRON
SBS Chr11 27392894 T-G Hetero INTERGENIC
SBS Chr12 3111465 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 5412897 5412914 17
Deletion Chr4 6117654 6117663 9
Deletion Chr8 10743428 10743429 1
Deletion Chr12 12850707 12850711 4
Deletion Chr10 20424985 20424987 2
Deletion Chr1 23632388 23632390 2
Deletion Chr8 24359034 24359051 17
Deletion Chr1 26803462 26803467 5
Deletion Chr1 29564521 29564522 1
Deletion Chr1 31661662 31661685 23 OsKitaake01g318200

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20847101 20847104 2
Insertion Chr1 35646519 35646523 3
Insertion Chr11 12445264 12445318 53

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11779129	C-A	Hetero	INTERGENIC
SBS	Chr1	30477233	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	43410678	T-A	Homo	NON_SYNONYMOUS_START
SBS	Chr1	43838291	T-C	Hetero	INTERGENIC
SBS	Chr3	5429303	T-A	Homo	INTERGENIC
SBS	Chr3	14549442	T-G	Homo	INTRON
SBS	Chr4	5600336	G-A	Hetero	INTERGENIC
SBS	Chr4	7990585	C-T	Homo	UTR_3_PRIME
SBS	Chr4	34669772	G-A	Homo	INTERGENIC
SBS	Chr5	8600720	T-G	Hetero	INTERGENIC
SBS	Chr6	3459579	A-G	Hetero	INTERGENIC
SBS	Chr6	3477241	T-G	Hetero	UTR_3_PRIME
SBS	Chr6	3477243	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	5529552	G-T	Hetero	INTERGENIC
SBS	Chr6	13848394	T-G	Hetero	INTERGENIC
SBS	Chr6	26879506	T-C	Hetero	INTERGENIC
SBS	Chr7	5401095	T-C	Homo	INTERGENIC
SBS	Chr7	7298479	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g082200
SBS	Chr8	13074644	G-A	Hetero	INTERGENIC
SBS	Chr8	13409757	C-A	Hetero	INTERGENIC
SBS	Chr8	23004705	G-C	Hetero	INTERGENIC
SBS	Chr8	25849573	G-A	Hetero	INTERGENIC
SBS	Chr8	25849574	C-A	Hetero	INTERGENIC
SBS	Chr8	25855600	T-A	Hetero	INTERGENIC
SBS	Chr11	5916451	C-A	Hetero	INTRON
SBS	Chr11	13393636	C-T	Homo	INTERGENIC
SBS	Chr11	24063406	G-T	Hetero	INTRON
SBS	Chr11	27392894	T-G	Hetero	INTERGENIC
SBS	Chr12	3111465	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	5412897	5412914	17
Deletion	Chr4	6117654	6117663	9
Deletion	Chr8	10743428	10743429	1
Deletion	Chr12	12850707	12850711	4
Deletion	Chr10	20424985	20424987	2
Deletion	Chr1	23632388	23632390	2
Deletion	Chr8	24359034	24359051	17
Deletion	Chr1	26803462	26803467	5
Deletion	Chr1	29564521	29564522	1
Deletion	Chr1	31661662	31661685	23	OsKitaake01g318200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes