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Mutant Information

Mutant Name	FN2403 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2403 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 85

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3859724 C-T Hetero INTERGENIC
SBS Chr1 5142409 C-A Hetero INTERGENIC
SBS Chr1 15903563 A-C Hetero INTERGENIC
SBS Chr1 17653914 T-A Hetero INTERGENIC
SBS Chr1 18509642 G-T Hetero INTERGENIC
SBS Chr1 19265352 C-T Hetero INTERGENIC
SBS Chr1 19653446 G-A Hetero INTERGENIC
SBS Chr1 19653920 T-C Hetero INTERGENIC
SBS Chr1 32563785 C-T Hetero INTERGENIC
SBS Chr2 3590446 T-C Hetero INTERGENIC
SBS Chr2 4718861 G-T Hetero INTRON
SBS Chr2 10277574 T-C Hetero INTERGENIC
SBS Chr2 12916950 G-A Hetero INTRON
SBS Chr2 23821788 G-C Hetero INTERGENIC
SBS Chr2 29551041 C-G Hetero UTR_3_PRIME
SBS Chr3 18198827 C-T Hetero INTERGENIC
SBS Chr3 23921158 G-A Hetero INTERGENIC
SBS Chr3 27918166 A-G Hetero INTRON
SBS Chr3 34776157 C-T Hetero INTERGENIC
SBS Chr4 2713313 G-C Hetero INTERGENIC
SBS Chr4 4624789 G-C Hetero INTERGENIC
SBS Chr4 6572518 G-T Hetero INTRON
SBS Chr4 8141595 C-T Hetero INTERGENIC
SBS Chr4 10699760 G-A Hetero INTERGENIC
SBS Chr4 11543891 C-A Hetero INTERGENIC
SBS Chr4 11880163 G-A Hetero INTERGENIC
SBS Chr4 16444556 C-A Hetero INTERGENIC
SBS Chr4 16981682 C-T Hetero INTERGENIC
SBS Chr4 19931675 G-T Hetero INTERGENIC
SBS Chr4 19979249 A-T Hetero INTERGENIC
SBS Chr4 21736300 G-T Hetero INTERGENIC
SBS Chr4 26057722 A-C Hetero INTERGENIC
SBS Chr4 29160298 G-A Hetero INTERGENIC
SBS Chr5 3981859 C-G Hetero SPLICE_SITE_REGION
SBS Chr5 9098190 C-G Hetero INTERGENIC
SBS Chr5 10492047 G-C Hetero INTERGENIC
SBS Chr5 11937011 C-T Hetero INTERGENIC
SBS Chr5 17761813 C-A Hetero INTERGENIC
SBS Chr5 23522050 C-T Hetero INTERGENIC
SBS Chr5 29260752 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 635317 C-T Hetero INTRON
SBS Chr6 9231393 C-A Hetero INTERGENIC
SBS Chr6 14360530 T-A Hetero INTERGENIC
SBS Chr6 14360531 C-A Hetero INTERGENIC
SBS Chr6 22876074 G-A Hetero INTERGENIC
SBS Chr6 22876075 C-A Hetero INTERGENIC
SBS Chr6 23576724 G-T Hetero INTERGENIC
SBS Chr6 27138155 T-A Hetero INTRON
SBS Chr7 2068822 G-T Hetero INTERGENIC
SBS Chr7 2350517 G-A Hetero INTERGENIC
SBS Chr7 16234887 A-G Hetero INTERGENIC
SBS Chr7 17209272 A-T Hetero INTERGENIC
SBS Chr7 21244821 T-C Hetero INTRON
SBS Chr7 23593615 C-T Hetero INTERGENIC
SBS Chr7 24615174 G-A Hetero STOP_GAINED OsKitaake07g219100
SBS Chr7 29177480 T-A Hetero INTERGENIC
SBS Chr8 906512 T-A Homo INTERGENIC
SBS Chr8 6662414 G-A Hetero INTERGENIC
SBS Chr8 7903365 A-G Hetero INTERGENIC
SBS Chr8 13352034 C-G Hetero INTERGENIC
SBS Chr8 18314226 C-A Homo INTRON
SBS Chr8 21098494 G-A Hetero INTERGENIC
SBS Chr9 10675461 T-A Hetero INTERGENIC
SBS Chr9 12511079 G-A Hetero INTERGENIC
SBS Chr9 16131391 A-T Hetero INTERGENIC
SBS Chr9 20870120 C-A Hetero INTERGENIC
SBS Chr9 20870121 G-T Hetero INTERGENIC
SBS Chr10 8856213 G-T Hetero INTERGENIC
SBS Chr10 12176285 G-A Hetero INTERGENIC
SBS Chr10 16922449 G-T Hetero INTERGENIC
SBS Chr10 17628715 A-T Hetero INTERGENIC
SBS Chr11 7349122 G-A Hetero INTERGENIC
SBS Chr11 10272467 C-T Hetero INTERGENIC
SBS Chr11 10365702 A-T Hetero INTERGENIC
SBS Chr11 22332184 T-C Homo INTERGENIC
SBS Chr12 3482590 G-A Homo INTERGENIC
SBS Chr12 4631542 C-T Hetero INTERGENIC
SBS Chr12 4772788 C-A Hetero INTERGENIC
SBS Chr12 10844225 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g100400
SBS Chr12 12090476 A-T Hetero INTERGENIC
SBS Chr12 12093606 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 12331042 C-T Hetero INTERGENIC
SBS Chr12 14742606 C-T Hetero INTERGENIC
SBS Chr12 15617651 T-G Hetero INTERGENIC
SBS Chr12 26374590 C-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 6091001 6230000 138999 13
Deletion Chr12 6234001 6330000 95999 8
Deletion Chr10 6753720 6753724 4
Deletion Chr3 7418234 7418236 2
Deletion Chr6 12069051 12069053 2
Deletion Chr4 15766081 15766082 1
Deletion Chr8 21322688 21322690 2
Deletion Chr2 34310001 34349000 38999 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 785364 785367 2
Insertion Chr3 18728164 18728167 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1162000 1584483 OsKitaake05g014900
Inversion Chr5 1162005 1584483 OsKitaake05g014900
Inversion Chr5 10296245 11045023
Inversion Chr5 11045011 11736485
Inversion Chr7 21081420 21346463 2
Inversion Chr7 21081424 21346462 2
Inversion Chr3 27482861 28010934 2
Inversion Chr3 27482863 28010934 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 13951196 Chr5 20147732 OsKitaake05g160400
Translocation Chr8 13955080 Chr5 20147741 OsKitaake05g160400
Translocation Chr4 14480963 Chr2 36357221 OsKitaake02g385200
Translocation Chr4 14480965 Chr2 36357215 OsKitaake02g385200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3859724	C-T	Hetero	INTERGENIC
SBS	Chr1	5142409	C-A	Hetero	INTERGENIC
SBS	Chr1	15903563	A-C	Hetero	INTERGENIC
SBS	Chr1	17653914	T-A	Hetero	INTERGENIC
SBS	Chr1	18509642	G-T	Hetero	INTERGENIC
SBS	Chr1	19265352	C-T	Hetero	INTERGENIC
SBS	Chr1	19653446	G-A	Hetero	INTERGENIC
SBS	Chr1	19653920	T-C	Hetero	INTERGENIC
SBS	Chr1	32563785	C-T	Hetero	INTERGENIC
SBS	Chr2	3590446	T-C	Hetero	INTERGENIC
SBS	Chr2	4718861	G-T	Hetero	INTRON
SBS	Chr2	10277574	T-C	Hetero	INTERGENIC
SBS	Chr2	12916950	G-A	Hetero	INTRON
SBS	Chr2	23821788	G-C	Hetero	INTERGENIC
SBS	Chr2	29551041	C-G	Hetero	UTR_3_PRIME
SBS	Chr3	18198827	C-T	Hetero	INTERGENIC
SBS	Chr3	23921158	G-A	Hetero	INTERGENIC
SBS	Chr3	27918166	A-G	Hetero	INTRON
SBS	Chr3	34776157	C-T	Hetero	INTERGENIC
SBS	Chr4	2713313	G-C	Hetero	INTERGENIC
SBS	Chr4	4624789	G-C	Hetero	INTERGENIC
SBS	Chr4	6572518	G-T	Hetero	INTRON
SBS	Chr4	8141595	C-T	Hetero	INTERGENIC
SBS	Chr4	10699760	G-A	Hetero	INTERGENIC
SBS	Chr4	11543891	C-A	Hetero	INTERGENIC
SBS	Chr4	11880163	G-A	Hetero	INTERGENIC
SBS	Chr4	16444556	C-A	Hetero	INTERGENIC
SBS	Chr4	16981682	C-T	Hetero	INTERGENIC
SBS	Chr4	19931675	G-T	Hetero	INTERGENIC
SBS	Chr4	19979249	A-T	Hetero	INTERGENIC
SBS	Chr4	21736300	G-T	Hetero	INTERGENIC
SBS	Chr4	26057722	A-C	Hetero	INTERGENIC
SBS	Chr4	29160298	G-A	Hetero	INTERGENIC
SBS	Chr5	3981859	C-G	Hetero	SPLICE_SITE_REGION
SBS	Chr5	9098190	C-G	Hetero	INTERGENIC
SBS	Chr5	10492047	G-C	Hetero	INTERGENIC
SBS	Chr5	11937011	C-T	Hetero	INTERGENIC
SBS	Chr5	17761813	C-A	Hetero	INTERGENIC
SBS	Chr5	23522050	C-T	Hetero	INTERGENIC
SBS	Chr5	29260752	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	635317	C-T	Hetero	INTRON
SBS	Chr6	9231393	C-A	Hetero	INTERGENIC
SBS	Chr6	14360530	T-A	Hetero	INTERGENIC
SBS	Chr6	14360531	C-A	Hetero	INTERGENIC
SBS	Chr6	22876074	G-A	Hetero	INTERGENIC
SBS	Chr6	22876075	C-A	Hetero	INTERGENIC
SBS	Chr6	23576724	G-T	Hetero	INTERGENIC
SBS	Chr6	27138155	T-A	Hetero	INTRON
SBS	Chr7	2068822	G-T	Hetero	INTERGENIC
SBS	Chr7	2350517	G-A	Hetero	INTERGENIC
SBS	Chr7	16234887	A-G	Hetero	INTERGENIC
SBS	Chr7	17209272	A-T	Hetero	INTERGENIC
SBS	Chr7	21244821	T-C	Hetero	INTRON
SBS	Chr7	23593615	C-T	Hetero	INTERGENIC
SBS	Chr7	24615174	G-A	Hetero	STOP_GAINED	OsKitaake07g219100
SBS	Chr7	29177480	T-A	Hetero	INTERGENIC
SBS	Chr8	906512	T-A	Homo	INTERGENIC
SBS	Chr8	6662414	G-A	Hetero	INTERGENIC
SBS	Chr8	7903365	A-G	Hetero	INTERGENIC
SBS	Chr8	13352034	C-G	Hetero	INTERGENIC
SBS	Chr8	18314226	C-A	Homo	INTRON
SBS	Chr8	21098494	G-A	Hetero	INTERGENIC
SBS	Chr9	10675461	T-A	Hetero	INTERGENIC
SBS	Chr9	12511079	G-A	Hetero	INTERGENIC
SBS	Chr9	16131391	A-T	Hetero	INTERGENIC
SBS	Chr9	20870120	C-A	Hetero	INTERGENIC
SBS	Chr9	20870121	G-T	Hetero	INTERGENIC
SBS	Chr10	8856213	G-T	Hetero	INTERGENIC
SBS	Chr10	12176285	G-A	Hetero	INTERGENIC
SBS	Chr10	16922449	G-T	Hetero	INTERGENIC
SBS	Chr10	17628715	A-T	Hetero	INTERGENIC
SBS	Chr11	7349122	G-A	Hetero	INTERGENIC
SBS	Chr11	10272467	C-T	Hetero	INTERGENIC
SBS	Chr11	10365702	A-T	Hetero	INTERGENIC
SBS	Chr11	22332184	T-C	Homo	INTERGENIC
SBS	Chr12	3482590	G-A	Homo	INTERGENIC
SBS	Chr12	4631542	C-T	Hetero	INTERGENIC
SBS	Chr12	4772788	C-A	Hetero	INTERGENIC
SBS	Chr12	10844225	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g100400
SBS	Chr12	12090476	A-T	Hetero	INTERGENIC
SBS	Chr12	12093606	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	12331042	C-T	Hetero	INTERGENIC
SBS	Chr12	14742606	C-T	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Hetero	INTERGENIC
SBS	Chr12	26374590	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	6091001	6230000	138999	13
Deletion	Chr12	6234001	6330000	95999	8
Deletion	Chr10	6753720	6753724	4
Deletion	Chr3	7418234	7418236	2
Deletion	Chr6	12069051	12069053	2
Deletion	Chr4	15766081	15766082	1
Deletion	Chr8	21322688	21322690	2
Deletion	Chr2	34310001	34349000	38999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1162000	1584483	OsKitaake05g014900
Inversion	Chr5	1162005	1584483	OsKitaake05g014900
Inversion	Chr5	10296245	11045023
Inversion	Chr5	11045011	11736485
Inversion	Chr7	21081420	21346463	2
Inversion	Chr7	21081424	21346462	2
Inversion	Chr3	27482861	28010934	2
Inversion	Chr3	27482863	28010934	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes