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Mutant Information

Mutant Name	FN2404 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2404 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 35267966 C-T Hetero INTERGENIC
SBS Chr1 43761293 A-C Hetero INTERGENIC
SBS Chr2 7463224 C-G Homo INTERGENIC
SBS Chr2 17390873 A-C Homo INTRON
SBS Chr3 20546365 G-T Homo INTERGENIC
SBS Chr3 23310471 G-A Hetero INTRON
SBS Chr3 24545194 G-A Hetero INTERGENIC
SBS Chr3 34661720 T-C Hetero INTERGENIC
SBS Chr4 23383034 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g144200
SBS Chr5 4571514 T-C Hetero INTERGENIC
SBS Chr5 4999941 T-C Hetero INTERGENIC
SBS Chr5 10616441 T-A Hetero INTRON
SBS Chr5 22940217 C-T Homo INTERGENIC
SBS Chr7 7801006 T-A Hetero INTERGENIC
SBS Chr7 27434843 G-A Hetero INTERGENIC
SBS Chr8 9616251 T-A Hetero INTERGENIC
SBS Chr8 26458110 G-A Hetero INTERGENIC
SBS Chr8 28316383 A-T Hetero SYNONYMOUS_CODING
SBS Chr9 20918720 T-C Hetero INTERGENIC
SBS Chr10 548131 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g004100
SBS Chr10 10104200 C-T Homo INTERGENIC
SBS Chr10 12028735 A-T Hetero INTERGENIC
SBS Chr11 18607245 A-G Hetero INTRON
SBS Chr12 4325645 G-A Homo INTERGENIC
SBS Chr12 5071165 T-C Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1636850 1636852 2
Deletion Chr6 5429934 5429937 3
Deletion Chr5 6669337 6669347 10
Deletion Chr3 7186175 7186176 1
Deletion Chr5 8598346 8598348 2
Deletion Chr10 9488744 9488751 7
Deletion Chr5 10980097 10980098 1
Deletion Chr3 14503978 14503988 10
Deletion Chr11 14785379 14785380 1
Deletion Chr11 15507857 15507866 9
Deletion Chr6 16723177 16723185 8
Deletion Chr5 16811080 16811082 2
Deletion Chr5 17790004 17790005 1
Deletion Chr11 25793915 25793917 2
Deletion Chr2 27086972 27086979 7
Deletion Chr3 29724063 29724078 15
Deletion Chr1 34603536 34603545 9
Deletion Chr1 38720664 38720668 4

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 23455247 23455250 2
Insertion Chr3 26675388 26675390 1
Insertion Chr5 12990535 12990538 2
Insertion Chr2 35354679 35354681 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 6703168 7038755 OsKitaake02g091301
Inversion Chr2 6703175 7038761 OsKitaake02g091301

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35267966	C-T	Hetero	INTERGENIC
SBS	Chr1	43761293	A-C	Hetero	INTERGENIC
SBS	Chr2	7463224	C-G	Homo	INTERGENIC
SBS	Chr2	17390873	A-C	Homo	INTRON
SBS	Chr3	20546365	G-T	Homo	INTERGENIC
SBS	Chr3	23310471	G-A	Hetero	INTRON
SBS	Chr3	24545194	G-A	Hetero	INTERGENIC
SBS	Chr3	34661720	T-C	Hetero	INTERGENIC
SBS	Chr4	23383034	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g144200
SBS	Chr5	4571514	T-C	Hetero	INTERGENIC
SBS	Chr5	4999941	T-C	Hetero	INTERGENIC
SBS	Chr5	10616441	T-A	Hetero	INTRON
SBS	Chr5	22940217	C-T	Homo	INTERGENIC
SBS	Chr7	7801006	T-A	Hetero	INTERGENIC
SBS	Chr7	27434843	G-A	Hetero	INTERGENIC
SBS	Chr8	9616251	T-A	Hetero	INTERGENIC
SBS	Chr8	26458110	G-A	Hetero	INTERGENIC
SBS	Chr8	28316383	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	20918720	T-C	Hetero	INTERGENIC
SBS	Chr10	548131	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g004100
SBS	Chr10	10104200	C-T	Homo	INTERGENIC
SBS	Chr10	12028735	A-T	Hetero	INTERGENIC
SBS	Chr11	18607245	A-G	Hetero	INTRON
SBS	Chr12	4325645	G-A	Homo	INTERGENIC
SBS	Chr12	5071165	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1636850	1636852	2
Deletion	Chr6	5429934	5429937	3
Deletion	Chr5	6669337	6669347	10
Deletion	Chr3	7186175	7186176	1
Deletion	Chr5	8598346	8598348	2
Deletion	Chr10	9488744	9488751	7
Deletion	Chr5	10980097	10980098	1
Deletion	Chr3	14503978	14503988	10
Deletion	Chr11	14785379	14785380	1
Deletion	Chr11	15507857	15507866	9
Deletion	Chr6	16723177	16723185	8
Deletion	Chr5	16811080	16811082	2
Deletion	Chr5	17790004	17790005	1
Deletion	Chr11	25793915	25793917	2
Deletion	Chr2	27086972	27086979	7
Deletion	Chr3	29724063	29724078	15
Deletion	Chr1	34603536	34603545	9
Deletion	Chr1	38720664	38720668	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6703168	7038755	OsKitaake02g091301
Inversion	Chr2	6703175	7038761	OsKitaake02g091301

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes