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Mutant Information

Mutant Name	FN2407 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2407 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8190121 A-T Hetero INTERGENIC
SBS Chr1 19649418 G-A Hetero INTERGENIC
SBS Chr1 25318867 C-T Hetero INTRON
SBS Chr1 29108035 G-A Homo INTERGENIC
SBS Chr1 37780878 G-T Hetero INTERGENIC
SBS Chr1 43428071 G-A Homo INTRON
SBS Chr2 13101089 A-G Homo INTRON
SBS Chr2 14886821 G-A Homo SYNONYMOUS_CODING
SBS Chr2 17178436 A-C Hetero INTERGENIC
SBS Chr3 33589987 C-T Hetero INTERGENIC
SBS Chr4 275975 C-G Hetero INTERGENIC
SBS Chr4 510312 T-C Hetero INTERGENIC
SBS Chr4 9277258 A-T Hetero INTERGENIC
SBS Chr4 12173804 C-A Hetero INTERGENIC
SBS Chr4 35053710 T-C Hetero INTERGENIC
SBS Chr5 2644999 C-T Hetero INTERGENIC
SBS Chr5 7795256 C-T Hetero INTERGENIC
SBS Chr5 7997107 G-A Homo INTERGENIC
SBS Chr5 9817107 G-A Hetero INTERGENIC
SBS Chr5 23349309 C-T Homo INTERGENIC
SBS Chr5 24949063 T-C Hetero INTERGENIC
SBS Chr5 28364473 T-G Homo UTR_5_PRIME
SBS Chr5 29302706 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g278201
SBS Chr6 5001737 T-C Hetero INTERGENIC
SBS Chr6 13411056 A-G Hetero INTERGENIC
SBS Chr6 26607233 T-C Hetero UTR_3_PRIME
SBS Chr7 367388 C-A Hetero INTRON
SBS Chr7 6783306 A-C Homo INTERGENIC
SBS Chr7 7487043 G-A Homo INTERGENIC
SBS Chr7 9635183 C-T Hetero INTERGENIC
SBS Chr7 26794074 G-A Hetero INTERGENIC
SBS Chr8 8050635 C-T Hetero INTERGENIC
SBS Chr8 10022306 G-A Hetero INTERGENIC
SBS Chr8 12245728 T-C Homo INTERGENIC
SBS Chr8 22687232 A-T Homo INTERGENIC
SBS Chr8 24134313 G-A Hetero INTERGENIC
SBS Chr8 26011357 G-A Hetero INTERGENIC
SBS Chr9 3587869 G-C Homo INTERGENIC
SBS Chr9 20995859 G-C Homo NON_SYNONYMOUS_CODING OsKitaake09g180000
SBS Chr11 3123212 T-A Homo INTERGENIC
SBS Chr11 5240546 A-G Hetero INTERGENIC
SBS Chr11 20288845 C-G Homo INTERGENIC
SBS Chr11 23124477 G-C Hetero INTERGENIC
SBS Chr12 3971468 G-A Hetero INTERGENIC
SBS Chr12 4155591 C-T Hetero STOP_GAINED OsKitaake12g056800
SBS Chr12 18206271 G-A Hetero INTERGENIC
SBS Chr12 21081144 G-T Homo INTERGENIC
SBS Chr12 22972320 T-A Hetero INTERGENIC
SBS Chr12 26013039 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g215300

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1376448 1376452 4
Deletion Chr9 2729272 2729273 1
Deletion Chr10 3080382 3080386 4
Deletion Chr10 8515438 8515441 3
Deletion Chr9 14260837 14260838 1
Deletion Chr5 17022720 17022721 1
Deletion Chr11 18261001 18349000 87999 7
Deletion Chr4 18930222 18930248 26
Deletion Chr5 19246641 19246642 1
Deletion Chr6 20486770 20486774 4
Deletion Chr12 20754696 20754700 4
Deletion Chr8 24757898 24757902 4
Deletion Chr7 25062918 25062921 3
Deletion Chr8 25882834 25882837 3
Deletion Chr3 30734535 30734540 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 18164273 18164276 2
Insertion Chr6 13871280 13871283 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 13727050 14152382 OsKitaake04g067700
Inversion Chr4 13727058 14152392 OsKitaake04g067700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8190121	A-T	Hetero	INTERGENIC
SBS	Chr1	19649418	G-A	Hetero	INTERGENIC
SBS	Chr1	25318867	C-T	Hetero	INTRON
SBS	Chr1	29108035	G-A	Homo	INTERGENIC
SBS	Chr1	37780878	G-T	Hetero	INTERGENIC
SBS	Chr1	43428071	G-A	Homo	INTRON
SBS	Chr2	13101089	A-G	Homo	INTRON
SBS	Chr2	14886821	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	17178436	A-C	Hetero	INTERGENIC
SBS	Chr3	33589987	C-T	Hetero	INTERGENIC
SBS	Chr4	275975	C-G	Hetero	INTERGENIC
SBS	Chr4	510312	T-C	Hetero	INTERGENIC
SBS	Chr4	9277258	A-T	Hetero	INTERGENIC
SBS	Chr4	12173804	C-A	Hetero	INTERGENIC
SBS	Chr4	35053710	T-C	Hetero	INTERGENIC
SBS	Chr5	2644999	C-T	Hetero	INTERGENIC
SBS	Chr5	7795256	C-T	Hetero	INTERGENIC
SBS	Chr5	7997107	G-A	Homo	INTERGENIC
SBS	Chr5	9817107	G-A	Hetero	INTERGENIC
SBS	Chr5	23349309	C-T	Homo	INTERGENIC
SBS	Chr5	24949063	T-C	Hetero	INTERGENIC
SBS	Chr5	28364473	T-G	Homo	UTR_5_PRIME
SBS	Chr5	29302706	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g278201
SBS	Chr6	5001737	T-C	Hetero	INTERGENIC
SBS	Chr6	13411056	A-G	Hetero	INTERGENIC
SBS	Chr6	26607233	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	367388	C-A	Hetero	INTRON
SBS	Chr7	6783306	A-C	Homo	INTERGENIC
SBS	Chr7	7487043	G-A	Homo	INTERGENIC
SBS	Chr7	9635183	C-T	Hetero	INTERGENIC
SBS	Chr7	26794074	G-A	Hetero	INTERGENIC
SBS	Chr8	8050635	C-T	Hetero	INTERGENIC
SBS	Chr8	10022306	G-A	Hetero	INTERGENIC
SBS	Chr8	12245728	T-C	Homo	INTERGENIC
SBS	Chr8	22687232	A-T	Homo	INTERGENIC
SBS	Chr8	24134313	G-A	Hetero	INTERGENIC
SBS	Chr8	26011357	G-A	Hetero	INTERGENIC
SBS	Chr9	3587869	G-C	Homo	INTERGENIC
SBS	Chr9	20995859	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g180000
SBS	Chr11	3123212	T-A	Homo	INTERGENIC
SBS	Chr11	5240546	A-G	Hetero	INTERGENIC
SBS	Chr11	20288845	C-G	Homo	INTERGENIC
SBS	Chr11	23124477	G-C	Hetero	INTERGENIC
SBS	Chr12	3971468	G-A	Hetero	INTERGENIC
SBS	Chr12	4155591	C-T	Hetero	STOP_GAINED	OsKitaake12g056800
SBS	Chr12	18206271	G-A	Hetero	INTERGENIC
SBS	Chr12	21081144	G-T	Homo	INTERGENIC
SBS	Chr12	22972320	T-A	Hetero	INTERGENIC
SBS	Chr12	26013039	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g215300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1376448	1376452	4
Deletion	Chr9	2729272	2729273	1
Deletion	Chr10	3080382	3080386	4
Deletion	Chr10	8515438	8515441	3
Deletion	Chr9	14260837	14260838	1
Deletion	Chr5	17022720	17022721	1
Deletion	Chr11	18261001	18349000	87999	7
Deletion	Chr4	18930222	18930248	26
Deletion	Chr5	19246641	19246642	1
Deletion	Chr6	20486770	20486774	4
Deletion	Chr12	20754696	20754700	4
Deletion	Chr8	24757898	24757902	4
Deletion	Chr7	25062918	25062921	3
Deletion	Chr8	25882834	25882837	3
Deletion	Chr3	30734535	30734540	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	13727050	14152382	OsKitaake04g067700
Inversion	Chr4	13727058	14152392	OsKitaake04g067700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes