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Mutant Information

Mutant Name	FN2408 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2408 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3994610 T-A Homo INTERGENIC
SBS Chr1 7680415 C-T Hetero INTERGENIC
SBS Chr1 21130714 A-T Hetero INTRON
SBS Chr1 32808953 C-T Hetero INTERGENIC
SBS Chr1 42050149 G-T Hetero INTERGENIC
SBS Chr2 10605484 A-T Hetero INTERGENIC
SBS Chr2 17084580 T-C Hetero INTERGENIC
SBS Chr2 18641631 T-A Hetero INTRON
SBS Chr2 25078813 C-T Hetero INTERGENIC
SBS Chr2 31043469 G-A Hetero INTERGENIC
SBS Chr2 36452121 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g386600
SBS Chr3 1582100 G-A Hetero INTERGENIC
SBS Chr3 6633920 G-A Hetero INTRON
SBS Chr3 23167012 C-T Hetero INTERGENIC
SBS Chr3 27986217 G-A Hetero INTERGENIC
SBS Chr4 2110875 G-A Hetero INTERGENIC
SBS Chr4 2269890 T-A Hetero INTERGENIC
SBS Chr4 4663655 T-C Hetero INTERGENIC
SBS Chr4 5273574 A-T Hetero INTERGENIC
SBS Chr4 6398630 A-C Hetero INTERGENIC
SBS Chr4 13744585 G-C Hetero INTERGENIC
SBS Chr4 18181281 T-A Hetero INTERGENIC
SBS Chr4 32924351 G-A Hetero INTERGENIC
SBS Chr5 17231607 G-A Hetero INTERGENIC
SBS Chr5 18738420 C-T Hetero INTERGENIC
SBS Chr5 20476103 G-A Hetero INTERGENIC
SBS Chr5 30142069 A-G Hetero INTERGENIC
SBS Chr6 7279645 C-T Homo INTRON
SBS Chr6 16614243 G-A Hetero INTERGENIC
SBS Chr6 17132801 G-T Hetero INTRON
SBS Chr6 19953706 G-A Hetero INTRON
SBS Chr7 4331125 G-T Hetero INTERGENIC
SBS Chr7 7959674 C-T Hetero INTERGENIC
SBS Chr7 8652863 T-C Hetero INTERGENIC
SBS Chr7 9814904 T-C Hetero INTERGENIC
SBS Chr7 13155199 A-T Hetero INTERGENIC
SBS Chr7 16022144 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g132800
SBS Chr7 17057610 C-A Hetero INTERGENIC
SBS Chr7 25962524 A-G Hetero INTRON
SBS Chr8 9976408 A-G Hetero INTERGENIC
SBS Chr8 11507049 C-G Hetero UTR_5_PRIME
SBS Chr8 18816224 G-A Hetero INTERGENIC
SBS Chr8 20605299 A-T Hetero INTERGENIC
SBS Chr8 24729710 C-T Hetero INTERGENIC
SBS Chr8 27908717 T-C Homo INTERGENIC
SBS Chr9 2245340 C-T Hetero INTERGENIC
SBS Chr9 11417523 A-T Hetero INTERGENIC
SBS Chr10 2950633 A-G Hetero UTR_3_PRIME
SBS Chr10 5826067 G-A Hetero INTERGENIC
SBS Chr10 21089811 A-T Hetero INTRON
SBS Chr11 5949688 T-G Hetero INTRON
SBS Chr11 8922666 C-A Hetero INTERGENIC
SBS Chr11 9279769 C-T Hetero INTERGENIC
SBS Chr11 13872565 T-C Hetero INTERGENIC
SBS Chr11 14918646 G-A Hetero INTERGENIC
SBS Chr11 19066212 G-A Hetero INTERGENIC
SBS Chr11 27216318 C-T Hetero INTERGENIC
SBS Chr12 12430305 G-T Hetero INTERGENIC
SBS Chr12 15823933 C-T Homo INTERGENIC
SBS Chr12 16070232 C-G Hetero INTERGENIC
SBS Chr12 22940569 C-T Hetero UTR_3_PRIME
SBS Chr12 24903644 C-T Hetero INTERGENIC
SBS Chr12 24903645 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2207977 2207982 5
Deletion Chr5 2636001 2674000 37999 6
Deletion Chr4 2662781 2662789 8
Deletion Chr6 4975572 4975573 1
Deletion Chr9 6349085 6349090 5
Deletion Chr2 12025605 12025609 4
Deletion Chr8 12945240 12945242 2
Deletion Chr12 14159343 14159350 7 OsKitaake12g115100
Deletion Chr3 18691416 18691435 19
Deletion Chr6 22333664 22333665 1
Deletion Chr7 25693109 25693110 1
Deletion Chr1 31305703 31305715 12
Deletion Chr1 38409851 38409853 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1623972 1623975 2
Insertion Chr1 41346756 41346759 2
Insertion Chr10 126990 126993 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 28657436 28792463 OsKitaake11g235600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 9462557 Chr4 5402545
Translocation Chr9 9465258 Chr4 5402549
Translocation Chr11 28792461 Chr6 30197852 OsKitaake11g235600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3994610	T-A	Homo	INTERGENIC
SBS	Chr1	7680415	C-T	Hetero	INTERGENIC
SBS	Chr1	21130714	A-T	Hetero	INTRON
SBS	Chr1	32808953	C-T	Hetero	INTERGENIC
SBS	Chr1	42050149	G-T	Hetero	INTERGENIC
SBS	Chr2	10605484	A-T	Hetero	INTERGENIC
SBS	Chr2	17084580	T-C	Hetero	INTERGENIC
SBS	Chr2	18641631	T-A	Hetero	INTRON
SBS	Chr2	25078813	C-T	Hetero	INTERGENIC
SBS	Chr2	31043469	G-A	Hetero	INTERGENIC
SBS	Chr2	36452121	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g386600
SBS	Chr3	1582100	G-A	Hetero	INTERGENIC
SBS	Chr3	6633920	G-A	Hetero	INTRON
SBS	Chr3	23167012	C-T	Hetero	INTERGENIC
SBS	Chr3	27986217	G-A	Hetero	INTERGENIC
SBS	Chr4	2110875	G-A	Hetero	INTERGENIC
SBS	Chr4	2269890	T-A	Hetero	INTERGENIC
SBS	Chr4	4663655	T-C	Hetero	INTERGENIC
SBS	Chr4	5273574	A-T	Hetero	INTERGENIC
SBS	Chr4	6398630	A-C	Hetero	INTERGENIC
SBS	Chr4	13744585	G-C	Hetero	INTERGENIC
SBS	Chr4	18181281	T-A	Hetero	INTERGENIC
SBS	Chr4	32924351	G-A	Hetero	INTERGENIC
SBS	Chr5	17231607	G-A	Hetero	INTERGENIC
SBS	Chr5	18738420	C-T	Hetero	INTERGENIC
SBS	Chr5	20476103	G-A	Hetero	INTERGENIC
SBS	Chr5	30142069	A-G	Hetero	INTERGENIC
SBS	Chr6	7279645	C-T	Homo	INTRON
SBS	Chr6	16614243	G-A	Hetero	INTERGENIC
SBS	Chr6	17132801	G-T	Hetero	INTRON
SBS	Chr6	19953706	G-A	Hetero	INTRON
SBS	Chr7	4331125	G-T	Hetero	INTERGENIC
SBS	Chr7	7959674	C-T	Hetero	INTERGENIC
SBS	Chr7	8652863	T-C	Hetero	INTERGENIC
SBS	Chr7	9814904	T-C	Hetero	INTERGENIC
SBS	Chr7	13155199	A-T	Hetero	INTERGENIC
SBS	Chr7	16022144	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g132800
SBS	Chr7	17057610	C-A	Hetero	INTERGENIC
SBS	Chr7	25962524	A-G	Hetero	INTRON
SBS	Chr8	9976408	A-G	Hetero	INTERGENIC
SBS	Chr8	11507049	C-G	Hetero	UTR_5_PRIME
SBS	Chr8	18816224	G-A	Hetero	INTERGENIC
SBS	Chr8	20605299	A-T	Hetero	INTERGENIC
SBS	Chr8	24729710	C-T	Hetero	INTERGENIC
SBS	Chr8	27908717	T-C	Homo	INTERGENIC
SBS	Chr9	2245340	C-T	Hetero	INTERGENIC
SBS	Chr9	11417523	A-T	Hetero	INTERGENIC
SBS	Chr10	2950633	A-G	Hetero	UTR_3_PRIME
SBS	Chr10	5826067	G-A	Hetero	INTERGENIC
SBS	Chr10	21089811	A-T	Hetero	INTRON
SBS	Chr11	5949688	T-G	Hetero	INTRON
SBS	Chr11	8922666	C-A	Hetero	INTERGENIC
SBS	Chr11	9279769	C-T	Hetero	INTERGENIC
SBS	Chr11	13872565	T-C	Hetero	INTERGENIC
SBS	Chr11	14918646	G-A	Hetero	INTERGENIC
SBS	Chr11	19066212	G-A	Hetero	INTERGENIC
SBS	Chr11	27216318	C-T	Hetero	INTERGENIC
SBS	Chr12	12430305	G-T	Hetero	INTERGENIC
SBS	Chr12	15823933	C-T	Homo	INTERGENIC
SBS	Chr12	16070232	C-G	Hetero	INTERGENIC
SBS	Chr12	22940569	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	24903644	C-T	Hetero	INTERGENIC
SBS	Chr12	24903645	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2207977	2207982	5
Deletion	Chr5	2636001	2674000	37999	6
Deletion	Chr4	2662781	2662789	8
Deletion	Chr6	4975572	4975573	1
Deletion	Chr9	6349085	6349090	5
Deletion	Chr2	12025605	12025609	4
Deletion	Chr8	12945240	12945242	2
Deletion	Chr12	14159343	14159350	7	OsKitaake12g115100
Deletion	Chr3	18691416	18691435	19
Deletion	Chr6	22333664	22333665	1
Deletion	Chr7	25693109	25693110	1
Deletion	Chr1	31305703	31305715	12
Deletion	Chr1	38409851	38409853	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	28657436	28792463	OsKitaake11g235600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes