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Mutant Information

Mutant Name	FN2410 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2410 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 251416 G-A Hetero INTERGENIC
SBS Chr1 13898883 C-T Homo INTERGENIC
SBS Chr1 19920484 C-T Hetero INTERGENIC
SBS Chr2 2333321 G-T Hetero INTERGENIC
SBS Chr2 22311669 A-G Hetero INTERGENIC
SBS Chr3 12973783 C-T Hetero INTERGENIC
SBS Chr3 24523145 A-G Hetero INTRON
SBS Chr3 24760640 G-C Hetero INTERGENIC
SBS Chr3 34429636 C-A Hetero INTERGENIC
SBS Chr4 5156830 T-A Hetero INTERGENIC
SBS Chr4 7336217 G-A Hetero INTRON
SBS Chr4 9737247 C-G Hetero INTERGENIC
SBS Chr4 13465000 T-C Hetero INTERGENIC
SBS Chr4 13936049 C-A Hetero INTERGENIC
SBS Chr5 20132398 C-T Homo INTERGENIC
SBS Chr6 12528481 G-A Hetero INTERGENIC
SBS Chr7 6985093 T-C Homo INTRON
SBS Chr7 18976410 C-A Homo INTERGENIC
SBS Chr7 20956700 C-G Hetero INTERGENIC
SBS Chr8 26103609 G-A Hetero INTRON
SBS Chr9 11195486 G-T Hetero INTERGENIC
SBS Chr9 22211796 T-A Hetero INTERGENIC
SBS Chr10 21395285 A-T Homo INTERGENIC
SBS Chr11 5012833 A-T Hetero INTRON
SBS Chr11 13090257 T-C Hetero INTERGENIC
SBS Chr12 1134651 A-T Homo INTRON
SBS Chr12 7896740 G-T Hetero INTERGENIC
SBS Chr12 13887782 T-G Hetero INTERGENIC
SBS Chr12 20586692 T-A Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 235096 235100 4
Deletion Chr7 472001 567000 94999 18
Deletion Chr4 2040312 2040329 17
Deletion Chr5 2864087 2864097 10
Deletion Chr8 3642898 3642908 10
Deletion Chr3 4440892 4440894 2
Deletion Chr12 5623419 5623420 1
Deletion Chr7 8184949 8184952 3
Deletion Chr1 8288743 8288744 1
Deletion Chr1 11461491 11461493 2
Deletion Chr12 12631599 12631600 1
Deletion Chr5 12867859 12867860 1
Deletion Chr2 15674429 15674430 1
Deletion Chr9 16713031 16713032 1 OsKitaake09g123600
Deletion Chr8 17436421 17436425 4
Deletion Chr10 17480965 17480967 2
Deletion Chr5 19368337 19368347 10
Deletion Chr3 20424472 20424479 7
Deletion Chr3 21416313 21416322 9
Deletion Chr3 24530305 24530306 1
Deletion Chr5 25008168 25008176 8
Deletion Chr4 26866608 26866609 1 OsKitaake04g194600
Deletion Chr2 28360057 28360059 2 OsKitaake02g285400
Deletion Chr2 30422541 30422554 13
Deletion Chr4 32673601 32673612 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 31191711 31191714 2
Insertion Chr11 2902754 2902757 2

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 472212 Chr5 2868261 OsKitaake05g032900
Translocation Chr7 472311 Chr5 29966041
Translocation Chr7 564745 Chr3 4818889
Translocation Chr4 5192421 Chr3 34114188 OsKitaake04g025300
Translocation Chr4 5192704 Chr3 34114189 OsKitaake04g025300
Translocation Chr12 12257954 Chr8 1607510 OsKitaake08g020200
Translocation Chr11 13231147 Chr5 2885528 OsKitaake05g033300
Translocation Chr11 13231154 Chr5 2868262 OsKitaake05g032900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	251416	G-A	Hetero	INTERGENIC
SBS	Chr1	13898883	C-T	Homo	INTERGENIC
SBS	Chr1	19920484	C-T	Hetero	INTERGENIC
SBS	Chr2	2333321	G-T	Hetero	INTERGENIC
SBS	Chr2	22311669	A-G	Hetero	INTERGENIC
SBS	Chr3	12973783	C-T	Hetero	INTERGENIC
SBS	Chr3	24523145	A-G	Hetero	INTRON
SBS	Chr3	24760640	G-C	Hetero	INTERGENIC
SBS	Chr3	34429636	C-A	Hetero	INTERGENIC
SBS	Chr4	5156830	T-A	Hetero	INTERGENIC
SBS	Chr4	7336217	G-A	Hetero	INTRON
SBS	Chr4	9737247	C-G	Hetero	INTERGENIC
SBS	Chr4	13465000	T-C	Hetero	INTERGENIC
SBS	Chr4	13936049	C-A	Hetero	INTERGENIC
SBS	Chr5	20132398	C-T	Homo	INTERGENIC
SBS	Chr6	12528481	G-A	Hetero	INTERGENIC
SBS	Chr7	6985093	T-C	Homo	INTRON
SBS	Chr7	18976410	C-A	Homo	INTERGENIC
SBS	Chr7	20956700	C-G	Hetero	INTERGENIC
SBS	Chr8	26103609	G-A	Hetero	INTRON
SBS	Chr9	11195486	G-T	Hetero	INTERGENIC
SBS	Chr9	22211796	T-A	Hetero	INTERGENIC
SBS	Chr10	21395285	A-T	Homo	INTERGENIC
SBS	Chr11	5012833	A-T	Hetero	INTRON
SBS	Chr11	13090257	T-C	Hetero	INTERGENIC
SBS	Chr12	1134651	A-T	Homo	INTRON
SBS	Chr12	7896740	G-T	Hetero	INTERGENIC
SBS	Chr12	13887782	T-G	Hetero	INTERGENIC
SBS	Chr12	20586692	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	235096	235100	4
Deletion	Chr7	472001	567000	94999	18
Deletion	Chr4	2040312	2040329	17
Deletion	Chr5	2864087	2864097	10
Deletion	Chr8	3642898	3642908	10
Deletion	Chr3	4440892	4440894	2
Deletion	Chr12	5623419	5623420	1
Deletion	Chr7	8184949	8184952	3
Deletion	Chr1	8288743	8288744	1
Deletion	Chr1	11461491	11461493	2
Deletion	Chr12	12631599	12631600	1
Deletion	Chr5	12867859	12867860	1
Deletion	Chr2	15674429	15674430	1
Deletion	Chr9	16713031	16713032	1	OsKitaake09g123600
Deletion	Chr8	17436421	17436425	4
Deletion	Chr10	17480965	17480967	2
Deletion	Chr5	19368337	19368347	10
Deletion	Chr3	20424472	20424479	7
Deletion	Chr3	21416313	21416322	9
Deletion	Chr3	24530305	24530306	1
Deletion	Chr5	25008168	25008176	8
Deletion	Chr4	26866608	26866609	1	OsKitaake04g194600
Deletion	Chr2	28360057	28360059	2	OsKitaake02g285400
Deletion	Chr2	30422541	30422554	13
Deletion	Chr4	32673601	32673612	11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	472212	Chr5	2868261	OsKitaake05g032900
Translocation	Chr7	472311	Chr5	29966041
Translocation	Chr7	564745	Chr3	4818889
Translocation	Chr4	5192421	Chr3	34114188	OsKitaake04g025300
Translocation	Chr4	5192704	Chr3	34114189	OsKitaake04g025300
Translocation	Chr12	12257954	Chr8	1607510	OsKitaake08g020200
Translocation	Chr11	13231147	Chr5	2885528	OsKitaake05g033300
Translocation	Chr11	13231154	Chr5	2868262	OsKitaake05g032900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes