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Mutant Information

Mutant Name	FN2411 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2411 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 69

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5698110 G-A Hetero INTERGENIC
SBS Chr1 15238709 T-C Hetero UTR_5_PRIME
SBS Chr1 25943698 G-A Hetero INTRON
SBS Chr1 32829022 C-T Hetero INTERGENIC
SBS Chr1 35710917 T-C Hetero UTR_5_PRIME
SBS Chr1 37654245 G-T Hetero UTR_3_PRIME
SBS Chr2 2711123 C-G Hetero INTERGENIC
SBS Chr2 6584781 A-G Hetero UTR_3_PRIME
SBS Chr2 10130928 C-T Hetero INTERGENIC
SBS Chr2 12884843 C-T Homo INTERGENIC
SBS Chr2 21965979 T-A Homo INTRON
SBS Chr2 27553151 G-A Hetero INTERGENIC
SBS Chr3 2177310 T-C Hetero INTERGENIC
SBS Chr3 9660594 G-A Hetero INTERGENIC
SBS Chr3 9859046 T-A Hetero STOP_GAINED OsKitaake03g134700
SBS Chr3 19355386 C-T Homo INTERGENIC
SBS Chr3 26992316 G-A Hetero INTERGENIC
SBS Chr3 32587383 G-A Hetero INTERGENIC
SBS Chr3 37378699 A-G Hetero INTERGENIC
SBS Chr4 4241343 C-G Hetero INTRON
SBS Chr4 7537886 C-T Hetero INTERGENIC
SBS Chr4 9891955 T-C Hetero INTERGENIC
SBS Chr4 15656628 C-T Hetero INTERGENIC
SBS Chr4 15764909 G-A Hetero INTERGENIC
SBS Chr4 24791906 A-T Homo INTERGENIC
SBS Chr4 34963588 A-G Homo UTR_3_PRIME
SBS Chr4 36235515 G-A Hetero INTERGENIC
SBS Chr5 1190870 C-T Hetero INTERGENIC
SBS Chr5 5456487 C-A Homo INTERGENIC
SBS Chr6 726817 C-T Hetero INTERGENIC
SBS Chr6 8278288 G-T Hetero INTERGENIC
SBS Chr6 12871849 C-T Homo INTERGENIC
SBS Chr6 18340402 A-T Homo INTERGENIC
SBS Chr6 19848056 C-T Hetero INTERGENIC
SBS Chr6 24670771 A-G Hetero INTERGENIC
SBS Chr7 2340522 T-C Homo INTERGENIC
SBS Chr7 13773833 C-T Hetero INTERGENIC
SBS Chr7 27266400 G-A Hetero INTERGENIC
SBS Chr8 3923269 C-T Hetero INTERGENIC
SBS Chr8 4803762 C-T Hetero INTERGENIC
SBS Chr8 6636893 T-C Hetero INTERGENIC
SBS Chr8 9793537 G-A Homo INTERGENIC
SBS Chr8 11303626 G-A Homo INTERGENIC
SBS Chr8 12176515 G-A Hetero INTERGENIC
SBS Chr8 12549999 A-T Hetero INTRON
SBS Chr8 16734964 A-T Hetero INTERGENIC
SBS Chr8 18076063 C-T Hetero INTERGENIC
SBS Chr9 7126473 G-T Homo INTERGENIC
SBS Chr9 11189117 C-T Hetero INTERGENIC
SBS Chr9 15563662 C-T Hetero INTERGENIC
SBS Chr9 16939184 G-A Homo INTERGENIC
SBS Chr10 4700465 A-G Homo INTERGENIC
SBS Chr10 8788103 G-A Hetero INTERGENIC
SBS Chr10 11686130 G-T Hetero INTERGENIC
SBS Chr10 13706559 C-T Hetero INTERGENIC
SBS Chr10 22389462 T-A Homo INTERGENIC
SBS Chr11 3912374 A-T Hetero INTERGENIC
SBS Chr11 10699034 G-A Homo INTERGENIC
SBS Chr11 16267105 C-G Hetero INTERGENIC
SBS Chr11 16945290 C-T Homo INTERGENIC
SBS Chr11 28535615 A-G Hetero INTERGENIC
SBS Chr12 2790231 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 3481755 T-C Hetero INTERGENIC
SBS Chr12 4765373 G-A Hetero INTERGENIC
SBS Chr12 5121827 T-A Hetero INTRON
SBS Chr12 12592674 C-T Hetero INTERGENIC
SBS Chr12 21528946 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g169100
SBS Chr12 25137069 A-G Hetero INTERGENIC
SBS Chr12 26485466 C-A Hetero INTERGENIC

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1120285 1120286 1
Deletion Chr10 2836001 2867000 30999 2
Deletion Chr7 3104001 3186000 81999 10
Deletion Chr2 4550609 4550610 1
Deletion Chr8 4796518 4796519 1
Deletion Chr7 5838272 5838281 9 OsKitaake07g071100
Deletion Chr11 7918371 7918373 2
Deletion Chr7 8066001 8095000 28999 2
Deletion Chr12 11274270 11274271 1
Deletion Chr4 14587147 14587165 18
Deletion Chr9 15404389 15404394 5
Deletion Chr6 15452628 15452649 21 OsKitaake06g152400
Deletion Chr2 15530042 15530046 4
Deletion Chr9 15800145 15800146 1 OsKitaake09g112800
Deletion Chr7 17464715 17464728 13
Deletion Chr8 17476180 17476186 6
Deletion Chr3 20797506 20797521 15
Deletion Chr5 21214499 21214508 9
Deletion Chr12 21674209 21674226 17
Deletion Chr8 21684038 21684052 14
Deletion Chr12 22135001 22191000 55999 7
Deletion Chr9 22288951 22288958 7
Deletion Chr3 22551001 22595000 43999 4
Deletion Chr9 22637761 22637765 4
Deletion Chr2 23182133 23182147 14 OsKitaake02g226700
Deletion Chr1 23626073 23626076 3
Deletion Chr4 26774633 26774638 5
Deletion Chr6 29792340 29792341 1
Deletion Chr3 34589063 34589066 3

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38734287 38734292 4
Insertion Chr2 19467819 19467822 2
Insertion Chr3 36935587 36935590 2
Insertion Chr4 17689269 17689272 2
Insertion Chr4 22072518 22072522 3
Insertion Chr7 7618927 7618930 2
Insertion Chr11 19440131 19440134 2
Insertion Chr12 10563642 10563645 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 8069943 Chr3 22546214
Translocation Chr7 8095194 Chr3 22548522 OsKitaake03g244601
Translocation Chr5 12467962 Chr1 763895 OsKitaake01g007700
Translocation Chr5 12470452 Chr1 763892 OsKitaake01g007700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5698110	G-A	Hetero	INTERGENIC
SBS	Chr1	15238709	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	25943698	G-A	Hetero	INTRON
SBS	Chr1	32829022	C-T	Hetero	INTERGENIC
SBS	Chr1	35710917	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	37654245	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	2711123	C-G	Hetero	INTERGENIC
SBS	Chr2	6584781	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	10130928	C-T	Hetero	INTERGENIC
SBS	Chr2	12884843	C-T	Homo	INTERGENIC
SBS	Chr2	21965979	T-A	Homo	INTRON
SBS	Chr2	27553151	G-A	Hetero	INTERGENIC
SBS	Chr3	2177310	T-C	Hetero	INTERGENIC
SBS	Chr3	9660594	G-A	Hetero	INTERGENIC
SBS	Chr3	9859046	T-A	Hetero	STOP_GAINED	OsKitaake03g134700
SBS	Chr3	19355386	C-T	Homo	INTERGENIC
SBS	Chr3	26992316	G-A	Hetero	INTERGENIC
SBS	Chr3	32587383	G-A	Hetero	INTERGENIC
SBS	Chr3	37378699	A-G	Hetero	INTERGENIC
SBS	Chr4	4241343	C-G	Hetero	INTRON
SBS	Chr4	7537886	C-T	Hetero	INTERGENIC
SBS	Chr4	9891955	T-C	Hetero	INTERGENIC
SBS	Chr4	15656628	C-T	Hetero	INTERGENIC
SBS	Chr4	15764909	G-A	Hetero	INTERGENIC
SBS	Chr4	24791906	A-T	Homo	INTERGENIC
SBS	Chr4	34963588	A-G	Homo	UTR_3_PRIME
SBS	Chr4	36235515	G-A	Hetero	INTERGENIC
SBS	Chr5	1190870	C-T	Hetero	INTERGENIC
SBS	Chr5	5456487	C-A	Homo	INTERGENIC
SBS	Chr6	726817	C-T	Hetero	INTERGENIC
SBS	Chr6	8278288	G-T	Hetero	INTERGENIC
SBS	Chr6	12871849	C-T	Homo	INTERGENIC
SBS	Chr6	18340402	A-T	Homo	INTERGENIC
SBS	Chr6	19848056	C-T	Hetero	INTERGENIC
SBS	Chr6	24670771	A-G	Hetero	INTERGENIC
SBS	Chr7	2340522	T-C	Homo	INTERGENIC
SBS	Chr7	13773833	C-T	Hetero	INTERGENIC
SBS	Chr7	27266400	G-A	Hetero	INTERGENIC
SBS	Chr8	3923269	C-T	Hetero	INTERGENIC
SBS	Chr8	4803762	C-T	Hetero	INTERGENIC
SBS	Chr8	6636893	T-C	Hetero	INTERGENIC
SBS	Chr8	9793537	G-A	Homo	INTERGENIC
SBS	Chr8	11303626	G-A	Homo	INTERGENIC
SBS	Chr8	12176515	G-A	Hetero	INTERGENIC
SBS	Chr8	12549999	A-T	Hetero	INTRON
SBS	Chr8	16734964	A-T	Hetero	INTERGENIC
SBS	Chr8	18076063	C-T	Hetero	INTERGENIC
SBS	Chr9	7126473	G-T	Homo	INTERGENIC
SBS	Chr9	11189117	C-T	Hetero	INTERGENIC
SBS	Chr9	15563662	C-T	Hetero	INTERGENIC
SBS	Chr9	16939184	G-A	Homo	INTERGENIC
SBS	Chr10	4700465	A-G	Homo	INTERGENIC
SBS	Chr10	8788103	G-A	Hetero	INTERGENIC
SBS	Chr10	11686130	G-T	Hetero	INTERGENIC
SBS	Chr10	13706559	C-T	Hetero	INTERGENIC
SBS	Chr10	22389462	T-A	Homo	INTERGENIC
SBS	Chr11	3912374	A-T	Hetero	INTERGENIC
SBS	Chr11	10699034	G-A	Homo	INTERGENIC
SBS	Chr11	16267105	C-G	Hetero	INTERGENIC
SBS	Chr11	16945290	C-T	Homo	INTERGENIC
SBS	Chr11	28535615	A-G	Hetero	INTERGENIC
SBS	Chr12	2790231	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	3481755	T-C	Hetero	INTERGENIC
SBS	Chr12	4765373	G-A	Hetero	INTERGENIC
SBS	Chr12	5121827	T-A	Hetero	INTRON
SBS	Chr12	12592674	C-T	Hetero	INTERGENIC
SBS	Chr12	21528946	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g169100
SBS	Chr12	25137069	A-G	Hetero	INTERGENIC
SBS	Chr12	26485466	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1120285	1120286	1
Deletion	Chr10	2836001	2867000	30999	2
Deletion	Chr7	3104001	3186000	81999	10
Deletion	Chr2	4550609	4550610	1
Deletion	Chr8	4796518	4796519	1
Deletion	Chr7	5838272	5838281	9	OsKitaake07g071100
Deletion	Chr11	7918371	7918373	2
Deletion	Chr7	8066001	8095000	28999	2
Deletion	Chr12	11274270	11274271	1
Deletion	Chr4	14587147	14587165	18
Deletion	Chr9	15404389	15404394	5
Deletion	Chr6	15452628	15452649	21	OsKitaake06g152400
Deletion	Chr2	15530042	15530046	4
Deletion	Chr9	15800145	15800146	1	OsKitaake09g112800
Deletion	Chr7	17464715	17464728	13
Deletion	Chr8	17476180	17476186	6
Deletion	Chr3	20797506	20797521	15
Deletion	Chr5	21214499	21214508	9
Deletion	Chr12	21674209	21674226	17
Deletion	Chr8	21684038	21684052	14
Deletion	Chr12	22135001	22191000	55999	7
Deletion	Chr9	22288951	22288958	7
Deletion	Chr3	22551001	22595000	43999	4
Deletion	Chr9	22637761	22637765	4
Deletion	Chr2	23182133	23182147	14	OsKitaake02g226700
Deletion	Chr1	23626073	23626076	3
Deletion	Chr4	26774633	26774638	5
Deletion	Chr6	29792340	29792341	1
Deletion	Chr3	34589063	34589066	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	8069943	Chr3	22546214
Translocation	Chr7	8095194	Chr3	22548522	OsKitaake03g244601
Translocation	Chr5	12467962	Chr1	763895	OsKitaake01g007700
Translocation	Chr5	12470452	Chr1	763892	OsKitaake01g007700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes