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Mutant Information

Mutant Name	FN2412 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2412 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 61

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20074253 G-A Hetero INTERGENIC
SBS Chr1 21488407 G-C Hetero INTERGENIC
SBS Chr1 23547231 G-C Hetero INTERGENIC
SBS Chr1 24237170 G-T Hetero INTERGENIC
SBS Chr1 25409446 G-A Hetero UTR_3_PRIME
SBS Chr1 37549279 C-T Hetero INTERGENIC
SBS Chr2 6310840 G-A Hetero INTERGENIC
SBS Chr2 12573682 T-C Hetero INTRON
SBS Chr2 22706639 A-T Homo INTERGENIC
SBS Chr2 24684331 A-G Hetero INTERGENIC
SBS Chr2 28992825 C-T Homo INTERGENIC
SBS Chr2 36292211 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g383900
SBS Chr3 436651 T-G Hetero INTERGENIC
SBS Chr3 10512374 C-T Hetero INTRON
SBS Chr3 14119765 A-G Hetero INTERGENIC
SBS Chr3 18918945 G-T Hetero INTERGENIC
SBS Chr3 20524257 G-T Homo INTERGENIC
SBS Chr3 26378481 C-T Hetero SPLICE_SITE_ACCEPTOR OsKitaake03g275200
SBS Chr3 28027426 C-T Hetero INTERGENIC
SBS Chr4 10787890 C-A Hetero INTERGENIC
SBS Chr4 16088949 C-G Hetero INTERGENIC
SBS Chr4 17918995 G-A Hetero INTERGENIC
SBS Chr5 2527001 G-T Hetero INTERGENIC
SBS Chr5 9948289 G-A Hetero INTERGENIC
SBS Chr5 13646372 A-T Hetero INTERGENIC
SBS Chr5 13646373 A-T Hetero INTERGENIC
SBS Chr5 13893863 C-T Hetero INTERGENIC
SBS Chr5 14104592 C-T Hetero INTERGENIC
SBS Chr5 20725074 C-A Hetero INTERGENIC
SBS Chr5 23441636 G-A Hetero UTR_5_PRIME
SBS Chr5 24016831 T-G Hetero INTERGENIC
SBS Chr5 24873460 G-A Hetero INTERGENIC
SBS Chr6 2642149 G-A Hetero INTERGENIC
SBS Chr6 3654308 T-C Hetero INTRON
SBS Chr6 8095976 T-G Hetero INTERGENIC
SBS Chr6 10478795 T-C Hetero INTERGENIC
SBS Chr6 11243270 A-T Homo INTRON
SBS Chr6 11712288 T-C Homo INTERGENIC
SBS Chr6 16498688 C-A Hetero INTERGENIC
SBS Chr6 22083841 A-T Hetero INTRON
SBS Chr7 3500763 C-A Homo INTERGENIC
SBS Chr7 26927873 T-C Homo INTERGENIC
SBS Chr8 5611631 T-C Hetero INTERGENIC
SBS Chr8 19731419 G-A Hetero INTERGENIC
SBS Chr9 3102879 A-G Hetero INTERGENIC
SBS Chr9 6353726 G-A Hetero INTERGENIC
SBS Chr9 7216762 C-T Hetero INTERGENIC
SBS Chr9 8241107 A-T Hetero INTERGENIC
SBS Chr9 13920830 G-A Hetero INTERGENIC
SBS Chr10 4575325 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g033900
SBS Chr10 14098017 C-A Hetero INTERGENIC
SBS Chr10 15852762 T-C Hetero INTERGENIC
SBS Chr10 17452302 A-G Homo INTRON
SBS Chr11 14846369 C-A Homo INTERGENIC
SBS Chr11 16842660 C-T Hetero INTERGENIC
SBS Chr11 25740810 G-A Hetero UTR_3_PRIME
SBS Chr12 5000323 A-C Homo INTERGENIC
SBS Chr12 14056436 C-A Homo INTERGENIC
SBS Chr12 14553864 G-T Hetero INTERGENIC
SBS Chr12 15484545 T-C Homo INTERGENIC
SBS Chr12 15663907 A-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3606666 3606672 6
Deletion Chr10 11148001 11213000 64999 5
Deletion Chr8 12039380 12039382 2
Deletion Chr9 15357048 15357050 2
Deletion Chr6 19511114 19511118 4
Deletion Chr5 20132090 20132092 2
Deletion Chr3 20871426 20871427 1
Deletion Chr11 23092050 23092051 1 OsKitaake11g183200
Deletion Chr12 23943930 23943934 4
Deletion Chr4 24888001 24903000 14999 OsKitaake04g165800
Deletion Chr4 24910001 24953000 42999 4
Deletion Chr6 30768009 30768024 15
Deletion Chr4 36100132 36100143 11

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 11084265 11085162 OsKitaake08g099000
Inversion Chr12 15484965 15760108
Inversion Chr12 24449759 24977444
Inversion Chr12 24449765 24977449
Inversion Chr7 25595582 26171779 OsKitaake07g232600
Inversion Chr2 34922885 34946740 2
Inversion Chr2 34922971 34946747 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 11079562 Chr7 25595592 OsKitaake07g232600
Translocation Chr8 11084269 Chr7 26172241 OsKitaake08g099000
Translocation Chr5 26016604 Chr2 34666828 2
Translocation Chr5 26028746 Chr2 34668001 2
Translocation Chr7 26171781 Chr4 3048264
Translocation Chr7 26172231 Chr4 3048262

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20074253	G-A	Hetero	INTERGENIC
SBS	Chr1	21488407	G-C	Hetero	INTERGENIC
SBS	Chr1	23547231	G-C	Hetero	INTERGENIC
SBS	Chr1	24237170	G-T	Hetero	INTERGENIC
SBS	Chr1	25409446	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	37549279	C-T	Hetero	INTERGENIC
SBS	Chr2	6310840	G-A	Hetero	INTERGENIC
SBS	Chr2	12573682	T-C	Hetero	INTRON
SBS	Chr2	22706639	A-T	Homo	INTERGENIC
SBS	Chr2	24684331	A-G	Hetero	INTERGENIC
SBS	Chr2	28992825	C-T	Homo	INTERGENIC
SBS	Chr2	36292211	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g383900
SBS	Chr3	436651	T-G	Hetero	INTERGENIC
SBS	Chr3	10512374	C-T	Hetero	INTRON
SBS	Chr3	14119765	A-G	Hetero	INTERGENIC
SBS	Chr3	18918945	G-T	Hetero	INTERGENIC
SBS	Chr3	20524257	G-T	Homo	INTERGENIC
SBS	Chr3	26378481	C-T	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake03g275200
SBS	Chr3	28027426	C-T	Hetero	INTERGENIC
SBS	Chr4	10787890	C-A	Hetero	INTERGENIC
SBS	Chr4	16088949	C-G	Hetero	INTERGENIC
SBS	Chr4	17918995	G-A	Hetero	INTERGENIC
SBS	Chr5	2527001	G-T	Hetero	INTERGENIC
SBS	Chr5	9948289	G-A	Hetero	INTERGENIC
SBS	Chr5	13646372	A-T	Hetero	INTERGENIC
SBS	Chr5	13646373	A-T	Hetero	INTERGENIC
SBS	Chr5	13893863	C-T	Hetero	INTERGENIC
SBS	Chr5	14104592	C-T	Hetero	INTERGENIC
SBS	Chr5	20725074	C-A	Hetero	INTERGENIC
SBS	Chr5	23441636	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	24016831	T-G	Hetero	INTERGENIC
SBS	Chr5	24873460	G-A	Hetero	INTERGENIC
SBS	Chr6	2642149	G-A	Hetero	INTERGENIC
SBS	Chr6	3654308	T-C	Hetero	INTRON
SBS	Chr6	8095976	T-G	Hetero	INTERGENIC
SBS	Chr6	10478795	T-C	Hetero	INTERGENIC
SBS	Chr6	11243270	A-T	Homo	INTRON
SBS	Chr6	11712288	T-C	Homo	INTERGENIC
SBS	Chr6	16498688	C-A	Hetero	INTERGENIC
SBS	Chr6	22083841	A-T	Hetero	INTRON
SBS	Chr7	3500763	C-A	Homo	INTERGENIC
SBS	Chr7	26927873	T-C	Homo	INTERGENIC
SBS	Chr8	5611631	T-C	Hetero	INTERGENIC
SBS	Chr8	19731419	G-A	Hetero	INTERGENIC
SBS	Chr9	3102879	A-G	Hetero	INTERGENIC
SBS	Chr9	6353726	G-A	Hetero	INTERGENIC
SBS	Chr9	7216762	C-T	Hetero	INTERGENIC
SBS	Chr9	8241107	A-T	Hetero	INTERGENIC
SBS	Chr9	13920830	G-A	Hetero	INTERGENIC
SBS	Chr10	4575325	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g033900
SBS	Chr10	14098017	C-A	Hetero	INTERGENIC
SBS	Chr10	15852762	T-C	Hetero	INTERGENIC
SBS	Chr10	17452302	A-G	Homo	INTRON
SBS	Chr11	14846369	C-A	Homo	INTERGENIC
SBS	Chr11	16842660	C-T	Hetero	INTERGENIC
SBS	Chr11	25740810	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	5000323	A-C	Homo	INTERGENIC
SBS	Chr12	14056436	C-A	Homo	INTERGENIC
SBS	Chr12	14553864	G-T	Hetero	INTERGENIC
SBS	Chr12	15484545	T-C	Homo	INTERGENIC
SBS	Chr12	15663907	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3606666	3606672	6
Deletion	Chr10	11148001	11213000	64999	5
Deletion	Chr8	12039380	12039382	2
Deletion	Chr9	15357048	15357050	2
Deletion	Chr6	19511114	19511118	4
Deletion	Chr5	20132090	20132092	2
Deletion	Chr3	20871426	20871427	1
Deletion	Chr11	23092050	23092051	1	OsKitaake11g183200
Deletion	Chr12	23943930	23943934	4
Deletion	Chr4	24888001	24903000	14999	OsKitaake04g165800
Deletion	Chr4	24910001	24953000	42999	4
Deletion	Chr6	30768009	30768024	15
Deletion	Chr4	36100132	36100143	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	11084265	11085162	OsKitaake08g099000
Inversion	Chr12	15484965	15760108
Inversion	Chr12	24449759	24977444
Inversion	Chr12	24449765	24977449
Inversion	Chr7	25595582	26171779	OsKitaake07g232600
Inversion	Chr2	34922885	34946740	2
Inversion	Chr2	34922971	34946747	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes