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| Mutant Information |
|---|
| Mutant Name | FN2415 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2415 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1939460 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 19911317 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25457227 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 33609030 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 36197388 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 36197389 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 4342669 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 13550016 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21017582 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1923979 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1923980 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 7789005 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 17693074 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 36158375 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3484776 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 15515938 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15960882 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 17438507 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29635615 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 1597308 | A-T | Homo | INTRON | |
| SBS | Chr8 | 6685672 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 2530817 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 17370126 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23733870 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 19207794 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 26598243 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 29183126 | T-C | Hetero | INTRON | |
| SBS | Chr12 | 11140875 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 22297185 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 22297186 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 27055543 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 5077251 | 5077252 | 1 | |
| Deletion | Chr4 | 11945010 | 11945011 | 1 | |
| Deletion | Chr5 | 15426733 | 15426735 | 2 | OsKitaake05g118300 |
| Deletion | Chr5 | 15452001 | 15468000 | 15999 | |
| Deletion | Chr5 | 15473001 | 15510000 | 36999 | |
| Deletion | Chr8 | 21691637 | 21691639 | 2 | |
| Deletion | Chr2 | 23877324 | 23877325 | 1 | |
| Deletion | Chr5 | 24363431 | 24363466 | 35 | |
| Deletion | Chr2 | 28317348 | 28317356 | 8 | |
| Deletion | Chr5 | 29330645 | 29330651 | 6 | |
| Deletion | Chr1 | 37610532 | 37610543 | 11 | |
| Deletion | Chr1 | 42079001 | 42205000 | 125999 | 26 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 27972823 | 27972826 | 2 | |
| Insertion | Chr7 | 24041355 | 24041358 | 2 | |
| Insertion | Chr8 | 10622748 | 10622751 | 2 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 5588075 | 5641994 | OsKitaake07g068600 |
| Inversion | Chr4 | 35158344 | 35221097 | 2 |
| Inversion | Chr4 | 35160932 | 35221098 | 2 |
Translocations: 9
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 5588080 | Chr6 | 15864253 | |
| Translocation | Chr7 | 5642001 | Chr6 | 15861453 | OsKitaake07g068600 |
| Translocation | Chr10 | 8658497 | Chr1 | 17293323 | OsKitaake10g053166 |
| Translocation | Chr9 | 9248007 | Chr1 | 32089230 | 2 |
| Translocation | Chr9 | 9248202 | Chr1 | 32089234 | 2 |
| Translocation | Chr11 | 11173981 | Chr3 | 35912181 | |
| Translocation | Chr11 | 11173986 | Chr3 | 35912337 | |
| Translocation | Chr5 | 26720247 | Chr2 | 4033663 | OsKitaake05g238700 |
| Translocation | Chr4 | 35160930 | Chr3 | 36095531 | OsKitaake04g296000 |