Search Kitaake

Mutant Information

Mutant Name	FN2417 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2417 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2623506 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g033300
SBS Chr1 14749128 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g167000
SBS Chr1 15641794 T-A Hetero INTERGENIC
SBS Chr1 22313266 A-C Hetero INTERGENIC
SBS Chr1 26500853 G-A Hetero INTERGENIC
SBS Chr1 34917479 G-A Hetero INTERGENIC
SBS Chr2 48706 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 3934936 G-A Hetero INTRON
SBS Chr2 13559593 C-T Hetero INTERGENIC
SBS Chr2 23616008 A-G Hetero INTRON
SBS Chr2 26828426 A-G Hetero INTERGENIC
SBS Chr2 26935900 C-T Homo INTERGENIC
SBS Chr2 32404282 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g331300
SBS Chr3 9724160 T-A Hetero INTRON
SBS Chr3 11442185 G-A Hetero INTERGENIC
SBS Chr3 21297424 G-T Hetero INTERGENIC
SBS Chr3 23890155 T-C Hetero INTRON
SBS Chr3 24794740 C-T Hetero INTERGENIC
SBS Chr3 36395959 T-A Hetero INTERGENIC
SBS Chr4 1449689 C-A Hetero INTRON
SBS Chr4 3270106 C-A Hetero INTERGENIC
SBS Chr4 14473855 C-A Hetero INTERGENIC
SBS Chr4 20899064 G-A Hetero INTERGENIC
SBS Chr4 24544902 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 1115894 A-T Hetero INTERGENIC
SBS Chr5 1115898 A-T Hetero INTERGENIC
SBS Chr5 3361259 C-A Hetero INTERGENIC
SBS Chr5 6647222 A-T Hetero INTERGENIC
SBS Chr5 15962455 C-T Hetero INTERGENIC
SBS Chr5 20698684 A-T Hetero INTRON
SBS Chr5 20698685 G-T Hetero INTRON
SBS Chr5 27220066 A-G Hetero INTERGENIC
SBS Chr6 4291099 G-T Hetero SYNONYMOUS_CODING
SBS Chr6 4522219 A-T Hetero INTERGENIC
SBS Chr6 4522220 G-T Hetero INTERGENIC
SBS Chr6 7592445 G-A Hetero INTERGENIC
SBS Chr6 24234067 T-G Hetero INTERGENIC
SBS Chr7 7756952 C-T Homo INTERGENIC
SBS Chr7 11395783 C-T Hetero INTERGENIC
SBS Chr7 17525932 C-T Homo INTRON
SBS Chr7 18371519 T-A Hetero INTERGENIC
SBS Chr7 27429953 A-T Homo INTRON
SBS Chr8 6433191 T-C Hetero INTERGENIC
SBS Chr8 12693050 T-C Hetero INTERGENIC
SBS Chr8 17354079 G-T Hetero INTERGENIC
SBS Chr10 23654070 G-A Hetero INTERGENIC
SBS Chr11 435382 G-A Hetero INTERGENIC
SBS Chr11 6836555 C-T Homo INTERGENIC
SBS Chr11 13338655 G-A Hetero INTERGENIC
SBS Chr11 22254110 A-G Hetero INTERGENIC
SBS Chr11 23035772 T-C Hetero INTRON
SBS Chr12 16782385 C-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 727608 727617 9
Deletion Chr9 1553196 1553263 67
Deletion Chr4 1843580 1843582 2
Deletion Chr9 4813990 4813993 3
Deletion Chr12 8365001 8552000 186999 8
Deletion Chr7 12577356 12577359 3
Deletion Chr11 13205001 13276000 70999 OsKitaake11g114800
Deletion Chr11 14233001 14301000 67999 5
Deletion Chr7 15689191 15689193 2
Deletion Chr11 18089375 18089376 1
Deletion Chr7 18390425 18390441 16
Deletion Chr11 18565001 18644000 78999 10
Deletion Chr5 18709803 18709808 5
Deletion Chr6 20702001 20854000 151999 8
Deletion Chr2 22320112 22320114 2
Deletion Chr1 23394894 23394895 1
Deletion Chr1 25441390 25441396 6
Deletion Chr6 26049190 26049194 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29427008 29427011 2
Insertion Chr4 32780571 32780574 2
Insertion Chr12 23634590 23634593 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7526762 8359064
Inversion Chr11 10339602 10742104
Inversion Chr11 10339643 10742113

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7852905 Chr1 22294247
Translocation Chr12 7853050 Chr1 22294236

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2623506	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g033300
SBS	Chr1	14749128	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g167000
SBS	Chr1	15641794	T-A	Hetero	INTERGENIC
SBS	Chr1	22313266	A-C	Hetero	INTERGENIC
SBS	Chr1	26500853	G-A	Hetero	INTERGENIC
SBS	Chr1	34917479	G-A	Hetero	INTERGENIC
SBS	Chr2	48706	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	3934936	G-A	Hetero	INTRON
SBS	Chr2	13559593	C-T	Hetero	INTERGENIC
SBS	Chr2	23616008	A-G	Hetero	INTRON
SBS	Chr2	26828426	A-G	Hetero	INTERGENIC
SBS	Chr2	26935900	C-T	Homo	INTERGENIC
SBS	Chr2	32404282	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g331300
SBS	Chr3	9724160	T-A	Hetero	INTRON
SBS	Chr3	11442185	G-A	Hetero	INTERGENIC
SBS	Chr3	21297424	G-T	Hetero	INTERGENIC
SBS	Chr3	23890155	T-C	Hetero	INTRON
SBS	Chr3	24794740	C-T	Hetero	INTERGENIC
SBS	Chr3	36395959	T-A	Hetero	INTERGENIC
SBS	Chr4	1449689	C-A	Hetero	INTRON
SBS	Chr4	3270106	C-A	Hetero	INTERGENIC
SBS	Chr4	14473855	C-A	Hetero	INTERGENIC
SBS	Chr4	20899064	G-A	Hetero	INTERGENIC
SBS	Chr4	24544902	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	1115894	A-T	Hetero	INTERGENIC
SBS	Chr5	1115898	A-T	Hetero	INTERGENIC
SBS	Chr5	3361259	C-A	Hetero	INTERGENIC
SBS	Chr5	6647222	A-T	Hetero	INTERGENIC
SBS	Chr5	15962455	C-T	Hetero	INTERGENIC
SBS	Chr5	20698684	A-T	Hetero	INTRON
SBS	Chr5	20698685	G-T	Hetero	INTRON
SBS	Chr5	27220066	A-G	Hetero	INTERGENIC
SBS	Chr6	4291099	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	4522219	A-T	Hetero	INTERGENIC
SBS	Chr6	4522220	G-T	Hetero	INTERGENIC
SBS	Chr6	7592445	G-A	Hetero	INTERGENIC
SBS	Chr6	24234067	T-G	Hetero	INTERGENIC
SBS	Chr7	7756952	C-T	Homo	INTERGENIC
SBS	Chr7	11395783	C-T	Hetero	INTERGENIC
SBS	Chr7	17525932	C-T	Homo	INTRON
SBS	Chr7	18371519	T-A	Hetero	INTERGENIC
SBS	Chr7	27429953	A-T	Homo	INTRON
SBS	Chr8	6433191	T-C	Hetero	INTERGENIC
SBS	Chr8	12693050	T-C	Hetero	INTERGENIC
SBS	Chr8	17354079	G-T	Hetero	INTERGENIC
SBS	Chr10	23654070	G-A	Hetero	INTERGENIC
SBS	Chr11	435382	G-A	Hetero	INTERGENIC
SBS	Chr11	6836555	C-T	Homo	INTERGENIC
SBS	Chr11	13338655	G-A	Hetero	INTERGENIC
SBS	Chr11	22254110	A-G	Hetero	INTERGENIC
SBS	Chr11	23035772	T-C	Hetero	INTRON
SBS	Chr12	16782385	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	727608	727617	9
Deletion	Chr9	1553196	1553263	67
Deletion	Chr4	1843580	1843582	2
Deletion	Chr9	4813990	4813993	3
Deletion	Chr12	8365001	8552000	186999	8
Deletion	Chr7	12577356	12577359	3
Deletion	Chr11	13205001	13276000	70999	OsKitaake11g114800
Deletion	Chr11	14233001	14301000	67999	5
Deletion	Chr7	15689191	15689193	2
Deletion	Chr11	18089375	18089376	1
Deletion	Chr7	18390425	18390441	16
Deletion	Chr11	18565001	18644000	78999	10
Deletion	Chr5	18709803	18709808	5
Deletion	Chr6	20702001	20854000	151999	8
Deletion	Chr2	22320112	22320114	2
Deletion	Chr1	23394894	23394895	1
Deletion	Chr1	25441390	25441396	6
Deletion	Chr6	26049190	26049194	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7526762	8359064
Inversion	Chr11	10339602	10742104
Inversion	Chr11	10339643	10742113

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes