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| Mutant Information |
|---|
| Mutant Name | FN2418 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2418 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16100871 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16100872 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 26398552 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 30339750 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g299200 |
| SBS | Chr2 | 11739300 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 19399664 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 25901588 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 26771391 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 8727070 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g119300 |
| SBS | Chr3 | 14351232 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g186900 |
| SBS | Chr3 | 22220189 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 32554192 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 4377208 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 15910026 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 18107840 | G-C | Homo | INTERGENIC | |
| SBS | Chr5 | 2933184 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 23619322 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10190716 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18603213 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23739560 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 20292951 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 25684168 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 16929128 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 20542064 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 13814967 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g084500 |
| SBS | Chr10 | 17320983 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 10694452 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 11170867 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 17496647 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19636923 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g153200 |
| SBS | Chr12 | 22579978 | T-A | Hetero | INTRON |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 11581001 | 11787000 | 205999 | 16 |
| Deletion | Chr6 | 13730262 | 13730264 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 18686981 | 18686985 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 31575673 | 31708349 | |
| Inversion | Chr1 | 31582155 | 32552615 | 2 |