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Mutant Information

Mutant Name	FN2419 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2419 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15266989 G-C Hetero INTERGENIC
SBS Chr1 22884729 C-T Hetero INTERGENIC
SBS Chr1 30495515 G-A Hetero INTERGENIC
SBS Chr1 34491953 G-C Hetero INTERGENIC
SBS Chr2 25488415 T-G Hetero INTRON
SBS Chr3 1358968 A-T Hetero INTERGENIC
SBS Chr3 6528694 T-C Homo INTRON
SBS Chr3 18289241 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g222800
SBS Chr3 24189538 T-C Hetero INTERGENIC
SBS Chr4 4753337 G-A Hetero INTERGENIC
SBS Chr4 16440463 C-T Hetero INTERGENIC
SBS Chr4 19819849 T-C Hetero INTERGENIC
SBS Chr4 26179873 G-A Hetero INTERGENIC
SBS Chr4 29731461 T-C Hetero INTRON
SBS Chr4 33157418 C-A Hetero UTR_5_PRIME
SBS Chr5 7004136 T-G Homo INTERGENIC
SBS Chr5 8161535 C-T Hetero INTERGENIC
SBS Chr5 12787984 T-C Homo INTERGENIC
SBS Chr5 19019697 C-T Hetero INTERGENIC
SBS Chr5 28713632 G-A Homo INTERGENIC
SBS Chr6 207385 C-T Hetero INTERGENIC
SBS Chr6 211055 G-A Hetero INTERGENIC
SBS Chr6 9532037 G-A Hetero INTERGENIC
SBS Chr6 29623096 G-T Hetero SPLICE_SITE_DONOR OsKitaake06g275700
SBS Chr7 6299001 C-A Hetero INTERGENIC
SBS Chr7 12048040 C-T Hetero INTERGENIC
SBS Chr7 16457646 C-T Hetero INTERGENIC
SBS Chr8 24983551 C-G Hetero INTERGENIC
SBS Chr9 486170 A-T Hetero INTERGENIC
SBS Chr9 2790211 T-A Hetero INTERGENIC
SBS Chr9 12039922 G-A Hetero INTRON
SBS Chr9 12599339 C-A Hetero INTERGENIC
SBS Chr9 12934596 C-T Hetero UTR_5_PRIME
SBS Chr9 15724117 C-T Hetero INTERGENIC
SBS Chr10 4770610 C-T Hetero INTERGENIC
SBS Chr10 18984709 G-C Hetero INTERGENIC
SBS Chr10 20191445 C-T Hetero INTERGENIC
SBS Chr10 23168058 C-T Hetero INTERGENIC
SBS Chr11 14454642 G-A Homo INTERGENIC
SBS Chr11 27049881 G-T Hetero INTERGENIC
SBS Chr11 27049882 G-T Hetero INTERGENIC
SBS Chr12 8637194 C-T Hetero INTERGENIC
SBS Chr12 8918839 G-A Hetero INTERGENIC
SBS Chr12 21477317 G-C Hetero INTERGENIC
SBS Chr12 24734994 G-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 210655 210657 2
Deletion Chr4 802488 802494 6
Deletion Chr1 1247873 1247897 24
Deletion Chr8 3902384 3902388 4
Deletion Chr6 4069312 4069314 2
Deletion Chr10 4599028 4599030 2
Deletion Chr7 6750953 6750957 4
Deletion Chr10 8213495 8213502 7
Deletion Chr3 9138281 9138282 1
Deletion Chr9 9467169 9467189 20
Deletion Chr6 10317646 10317647 1
Deletion Chr4 11073282 11073297 15
Deletion Chr3 16151082 16151089 7
Deletion Chr11 16503138 16503147 9
Deletion Chr11 18875297 18875303 6
Deletion Chr5 19517812 19517816 4
Deletion Chr8 22823452 22823478 26
Deletion Chr1 23247011 23247012 1
Deletion Chr10 23724170 23724171 1
Deletion Chr3 24570598 24570601 3
Deletion Chr3 29561350 29561352 2
Deletion Chr5 29815573 29815574 1 OsKitaake05g285300

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15190838 15190841 2
Insertion Chr4 15871477 15871480 2
Insertion Chr10 16030280 16030283 2
Insertion Chr12 16251726 16251729 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 19680946 19681518

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15266989	G-C	Hetero	INTERGENIC
SBS	Chr1	22884729	C-T	Hetero	INTERGENIC
SBS	Chr1	30495515	G-A	Hetero	INTERGENIC
SBS	Chr1	34491953	G-C	Hetero	INTERGENIC
SBS	Chr2	25488415	T-G	Hetero	INTRON
SBS	Chr3	1358968	A-T	Hetero	INTERGENIC
SBS	Chr3	6528694	T-C	Homo	INTRON
SBS	Chr3	18289241	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g222800
SBS	Chr3	24189538	T-C	Hetero	INTERGENIC
SBS	Chr4	4753337	G-A	Hetero	INTERGENIC
SBS	Chr4	16440463	C-T	Hetero	INTERGENIC
SBS	Chr4	19819849	T-C	Hetero	INTERGENIC
SBS	Chr4	26179873	G-A	Hetero	INTERGENIC
SBS	Chr4	29731461	T-C	Hetero	INTRON
SBS	Chr4	33157418	C-A	Hetero	UTR_5_PRIME
SBS	Chr5	7004136	T-G	Homo	INTERGENIC
SBS	Chr5	8161535	C-T	Hetero	INTERGENIC
SBS	Chr5	12787984	T-C	Homo	INTERGENIC
SBS	Chr5	19019697	C-T	Hetero	INTERGENIC
SBS	Chr5	28713632	G-A	Homo	INTERGENIC
SBS	Chr6	207385	C-T	Hetero	INTERGENIC
SBS	Chr6	211055	G-A	Hetero	INTERGENIC
SBS	Chr6	9532037	G-A	Hetero	INTERGENIC
SBS	Chr6	29623096	G-T	Hetero	SPLICE_SITE_DONOR	OsKitaake06g275700
SBS	Chr7	6299001	C-A	Hetero	INTERGENIC
SBS	Chr7	12048040	C-T	Hetero	INTERGENIC
SBS	Chr7	16457646	C-T	Hetero	INTERGENIC
SBS	Chr8	24983551	C-G	Hetero	INTERGENIC
SBS	Chr9	486170	A-T	Hetero	INTERGENIC
SBS	Chr9	2790211	T-A	Hetero	INTERGENIC
SBS	Chr9	12039922	G-A	Hetero	INTRON
SBS	Chr9	12599339	C-A	Hetero	INTERGENIC
SBS	Chr9	12934596	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	15724117	C-T	Hetero	INTERGENIC
SBS	Chr10	4770610	C-T	Hetero	INTERGENIC
SBS	Chr10	18984709	G-C	Hetero	INTERGENIC
SBS	Chr10	20191445	C-T	Hetero	INTERGENIC
SBS	Chr10	23168058	C-T	Hetero	INTERGENIC
SBS	Chr11	14454642	G-A	Homo	INTERGENIC
SBS	Chr11	27049881	G-T	Hetero	INTERGENIC
SBS	Chr11	27049882	G-T	Hetero	INTERGENIC
SBS	Chr12	8637194	C-T	Hetero	INTERGENIC
SBS	Chr12	8918839	G-A	Hetero	INTERGENIC
SBS	Chr12	21477317	G-C	Hetero	INTERGENIC
SBS	Chr12	24734994	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	210655	210657	2
Deletion	Chr4	802488	802494	6
Deletion	Chr1	1247873	1247897	24
Deletion	Chr8	3902384	3902388	4
Deletion	Chr6	4069312	4069314	2
Deletion	Chr10	4599028	4599030	2
Deletion	Chr7	6750953	6750957	4
Deletion	Chr10	8213495	8213502	7
Deletion	Chr3	9138281	9138282	1
Deletion	Chr9	9467169	9467189	20
Deletion	Chr6	10317646	10317647	1
Deletion	Chr4	11073282	11073297	15
Deletion	Chr3	16151082	16151089	7
Deletion	Chr11	16503138	16503147	9
Deletion	Chr11	18875297	18875303	6
Deletion	Chr5	19517812	19517816	4
Deletion	Chr8	22823452	22823478	26
Deletion	Chr1	23247011	23247012	1
Deletion	Chr10	23724170	23724171	1
Deletion	Chr3	24570598	24570601	3
Deletion	Chr3	29561350	29561352	2
Deletion	Chr5	29815573	29815574	1	OsKitaake05g285300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	19680946	19681518

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes