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Mutant Information

Mutant Name	FN2420 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2420 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2783847 G-A Homo INTRON
SBS Chr1 18910221 C-T Homo INTERGENIC
SBS Chr1 30625309 G-A Hetero INTERGENIC
SBS Chr1 41575968 G-A Hetero INTERGENIC
SBS Chr2 18798086 C-A Hetero INTERGENIC
SBS Chr2 26025252 A-G Hetero UTR_3_PRIME
SBS Chr2 35084178 C-T Homo INTERGENIC
SBS Chr3 16655689 T-G Hetero INTERGENIC
SBS Chr3 16655690 C-A Hetero INTERGENIC
SBS Chr3 32143812 T-G Homo INTERGENIC
SBS Chr3 37699352 C-T Homo INTERGENIC
SBS Chr4 18341169 C-T Homo INTERGENIC
SBS Chr4 20245821 T-G Homo INTERGENIC
SBS Chr4 20245822 T-A Homo INTERGENIC
SBS Chr4 21714380 G-T Homo INTERGENIC
SBS Chr4 34611826 A-G Hetero INTRON
SBS Chr5 3934654 C-T Hetero INTERGENIC
SBS Chr5 9976499 G-C Homo INTERGENIC
SBS Chr5 22139055 C-T Hetero INTERGENIC
SBS Chr5 26601189 A-T Hetero INTERGENIC
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr6 17347278 C-T Homo INTERGENIC
SBS Chr7 17504451 G-A Hetero INTERGENIC
SBS Chr7 21156554 G-A Homo INTERGENIC
SBS Chr8 6758308 C-T Hetero INTERGENIC
SBS Chr8 7491144 A-T Hetero INTERGENIC
SBS Chr11 17855158 T-C Hetero INTRON
SBS Chr11 24436101 G-C Hetero SYNONYMOUS_CODING
SBS Chr12 10447285 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1135273 1135279 6
Deletion Chr8 5504901 5504902 1
Deletion Chr12 8415233 8415235 2
Deletion Chr3 10747220 10747222 2
Deletion Chr5 13585184 13585185 1
Deletion Chr5 13927975 13927983 8
Deletion Chr12 14244621 14244633 12
Deletion Chr10 16218492 16218501 9
Deletion Chr7 20167007 20167010 3
Deletion Chr7 20801639 20801640 1
Deletion Chr7 20973250 20973253 3
Deletion Chr7 21026509 21026518 9
Deletion Chr7 21872176 21872189 13
Deletion Chr4 22881911 22881914 3
Deletion Chr11 23900169 23900177 8 OsKitaake11g191800
Deletion Chr1 27486001 27501000 14999 OsKitaake01g267300
Deletion Chr6 28035685 28035690 5
Deletion Chr11 28918058 28918063 5
Deletion Chr4 29899001 29961000 61999 4
Deletion Chr1 41148124 41148126 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4737826 4737828 1
Insertion Chr6 14325538 14325541 2
Insertion Chr8 4559420 4559423 2
Insertion Chr10 22567317 22567320 2
Insertion Chr7 8498072 8498074 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 27132703 27531066 2
Inversion Chr6 27227123 27531067 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 27227389 Chr5 3906659 OsKitaake06g245200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2783847	G-A	Homo	INTRON
SBS	Chr1	18910221	C-T	Homo	INTERGENIC
SBS	Chr1	30625309	G-A	Hetero	INTERGENIC
SBS	Chr1	41575968	G-A	Hetero	INTERGENIC
SBS	Chr2	18798086	C-A	Hetero	INTERGENIC
SBS	Chr2	26025252	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	35084178	C-T	Homo	INTERGENIC
SBS	Chr3	16655689	T-G	Hetero	INTERGENIC
SBS	Chr3	16655690	C-A	Hetero	INTERGENIC
SBS	Chr3	32143812	T-G	Homo	INTERGENIC
SBS	Chr3	37699352	C-T	Homo	INTERGENIC
SBS	Chr4	18341169	C-T	Homo	INTERGENIC
SBS	Chr4	20245821	T-G	Homo	INTERGENIC
SBS	Chr4	20245822	T-A	Homo	INTERGENIC
SBS	Chr4	21714380	G-T	Homo	INTERGENIC
SBS	Chr4	34611826	A-G	Hetero	INTRON
SBS	Chr5	3934654	C-T	Hetero	INTERGENIC
SBS	Chr5	9976499	G-C	Homo	INTERGENIC
SBS	Chr5	22139055	C-T	Hetero	INTERGENIC
SBS	Chr5	26601189	A-T	Hetero	INTERGENIC
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr6	17347278	C-T	Homo	INTERGENIC
SBS	Chr7	17504451	G-A	Hetero	INTERGENIC
SBS	Chr7	21156554	G-A	Homo	INTERGENIC
SBS	Chr8	6758308	C-T	Hetero	INTERGENIC
SBS	Chr8	7491144	A-T	Hetero	INTERGENIC
SBS	Chr11	17855158	T-C	Hetero	INTRON
SBS	Chr11	24436101	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr12	10447285	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1135273	1135279	6
Deletion	Chr8	5504901	5504902	1
Deletion	Chr12	8415233	8415235	2
Deletion	Chr3	10747220	10747222	2
Deletion	Chr5	13585184	13585185	1
Deletion	Chr5	13927975	13927983	8
Deletion	Chr12	14244621	14244633	12
Deletion	Chr10	16218492	16218501	9
Deletion	Chr7	20167007	20167010	3
Deletion	Chr7	20801639	20801640	1
Deletion	Chr7	20973250	20973253	3
Deletion	Chr7	21026509	21026518	9
Deletion	Chr7	21872176	21872189	13
Deletion	Chr4	22881911	22881914	3
Deletion	Chr11	23900169	23900177	8	OsKitaake11g191800
Deletion	Chr1	27486001	27501000	14999	OsKitaake01g267300
Deletion	Chr6	28035685	28035690	5
Deletion	Chr11	28918058	28918063	5
Deletion	Chr4	29899001	29961000	61999	4
Deletion	Chr1	41148124	41148126	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	27132703	27531066	2
Inversion	Chr6	27227123	27531067	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes