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Mutant Information

Mutant Name	FN2421 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2421 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4042114 C-T Hetero UTR_5_PRIME
SBS Chr1 7237488 C-G Hetero INTERGENIC
SBS Chr1 9515887 G-T Homo INTERGENIC
SBS Chr1 9515888 G-T Homo INTERGENIC
SBS Chr1 9587272 T-A Homo INTERGENIC
SBS Chr1 9587273 G-A Homo INTERGENIC
SBS Chr1 9634604 C-T Homo INTERGENIC
SBS Chr1 9949727 A-T Homo INTERGENIC
SBS Chr1 9949728 A-T Homo INTERGENIC
SBS Chr1 19197478 C-T Hetero INTERGENIC
SBS Chr1 22833375 G-C Hetero INTERGENIC
SBS Chr1 42224410 G-A Hetero INTERGENIC
SBS Chr2 4581571 G-A Hetero INTERGENIC
SBS Chr2 12602342 G-C Homo INTERGENIC
SBS Chr2 30282490 T-G Hetero INTERGENIC
SBS Chr3 1789471 T-A Homo INTERGENIC
SBS Chr3 4694986 A-T Homo UTR_3_PRIME
SBS Chr3 10203378 C-T Hetero INTRON
SBS Chr3 15020803 C-T Hetero INTRON
SBS Chr3 20286965 C-T Hetero INTERGENIC
SBS Chr3 24341153 G-A Homo INTERGENIC
SBS Chr4 4911258 G-A Hetero INTERGENIC
SBS Chr4 8498147 T-A Hetero INTERGENIC
SBS Chr4 8959223 T-C Hetero INTRON
SBS Chr4 10482158 T-A Hetero INTERGENIC
SBS Chr4 15127304 G-T Hetero INTRON
SBS Chr4 15457284 A-T Hetero INTERGENIC
SBS Chr4 21579068 G-A Hetero INTERGENIC
SBS Chr4 36002888 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 8041765 T-A Hetero INTERGENIC
SBS Chr5 19879447 A-T Hetero INTERGENIC
SBS Chr5 23406648 C-A Hetero INTERGENIC
SBS Chr6 24467556 T-C Hetero SYNONYMOUS_CODING
SBS Chr7 1599913 G-A Hetero INTRON
SBS Chr7 8207456 G-A Hetero INTERGENIC
SBS Chr7 15127095 A-C Hetero INTRON
SBS Chr8 9554738 G-A Homo INTERGENIC
SBS Chr8 22101152 T-C Homo SYNONYMOUS_CODING
SBS Chr8 24923599 T-C Hetero INTERGENIC
SBS Chr8 29030952 T-C Homo INTERGENIC
SBS Chr9 6102940 C-T Hetero INTERGENIC
SBS Chr9 6102941 A-T Hetero INTERGENIC
SBS Chr9 7738218 A-G Hetero INTERGENIC
SBS Chr9 20401816 C-A Hetero INTERGENIC
SBS Chr9 20945716 G-T Hetero INTRON
SBS Chr9 20945717 G-T Hetero INTRON
SBS Chr10 11347729 A-G Hetero INTERGENIC
SBS Chr10 15072086 A-G Homo UTR_3_PRIME
SBS Chr11 1202155 C-T Homo INTERGENIC
SBS Chr11 11659900 C-T Hetero INTERGENIC
SBS Chr12 13219162 G-A Hetero INTERGENIC
SBS Chr12 13929244 C-A Hetero INTERGENIC
SBS Chr12 18816741 T-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 559001 663000 103999 23
Deletion Chr6 1683112 1683118 6
Deletion Chr3 4721753 4721774 21
Deletion Chr3 7585156 7585168 12
Deletion Chr2 8498001 8515000 16999 4
Deletion Chr1 9609147 9609148 1
Deletion Chr1 9610650 9610666 16
Deletion Chr6 9791894 9791910 16
Deletion Chr5 12191478 12191485 7
Deletion Chr8 18462750 18462762 12
Deletion Chr2 20881537 20881539 2
Deletion Chr9 20896001 20948000 51999 9
Deletion Chr4 24191001 24223000 31999 2
Deletion Chr3 30017678 30017680 2
Deletion Chr2 34399795 34399802 7
Deletion Chr2 35810532 35810540 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 20083289 20083291 1 OsKitaake12g149751

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 7972679 8512524
Inversion Chr2 7987425 8516153 OsKitaake02g108300
Inversion Chr2 8497915 8516151 OsKitaake02g108300
Inversion Chr2 8512315 8512537
Inversion Chr4 23971607 24233875
Inversion Chr4 24088561 24233873
Inversion Chr1 29339331 29369520 2
Inversion Chr1 29339333 29369521 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 664013 Chr3 3301262 OsKitaake12g008600
Translocation Chr12 664322 Chr3 3301255 OsKitaake12g008600
Translocation Chr12 3276267 Chr2 19897844 OsKitaake02g194100
Translocation Chr12 3276275 Chr2 19900929
Translocation Chr4 17872125 Chr2 8498494 OsKitaake02g108000
Translocation Chr4 17872157 Chr2 8497920

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4042114	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	7237488	C-G	Hetero	INTERGENIC
SBS	Chr1	9515887	G-T	Homo	INTERGENIC
SBS	Chr1	9515888	G-T	Homo	INTERGENIC
SBS	Chr1	9587272	T-A	Homo	INTERGENIC
SBS	Chr1	9587273	G-A	Homo	INTERGENIC
SBS	Chr1	9634604	C-T	Homo	INTERGENIC
SBS	Chr1	9949727	A-T	Homo	INTERGENIC
SBS	Chr1	9949728	A-T	Homo	INTERGENIC
SBS	Chr1	19197478	C-T	Hetero	INTERGENIC
SBS	Chr1	22833375	G-C	Hetero	INTERGENIC
SBS	Chr1	42224410	G-A	Hetero	INTERGENIC
SBS	Chr2	4581571	G-A	Hetero	INTERGENIC
SBS	Chr2	12602342	G-C	Homo	INTERGENIC
SBS	Chr2	30282490	T-G	Hetero	INTERGENIC
SBS	Chr3	1789471	T-A	Homo	INTERGENIC
SBS	Chr3	4694986	A-T	Homo	UTR_3_PRIME
SBS	Chr3	10203378	C-T	Hetero	INTRON
SBS	Chr3	15020803	C-T	Hetero	INTRON
SBS	Chr3	20286965	C-T	Hetero	INTERGENIC
SBS	Chr3	24341153	G-A	Homo	INTERGENIC
SBS	Chr4	4911258	G-A	Hetero	INTERGENIC
SBS	Chr4	8498147	T-A	Hetero	INTERGENIC
SBS	Chr4	8959223	T-C	Hetero	INTRON
SBS	Chr4	10482158	T-A	Hetero	INTERGENIC
SBS	Chr4	15127304	G-T	Hetero	INTRON
SBS	Chr4	15457284	A-T	Hetero	INTERGENIC
SBS	Chr4	21579068	G-A	Hetero	INTERGENIC
SBS	Chr4	36002888	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	8041765	T-A	Hetero	INTERGENIC
SBS	Chr5	19879447	A-T	Hetero	INTERGENIC
SBS	Chr5	23406648	C-A	Hetero	INTERGENIC
SBS	Chr6	24467556	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	1599913	G-A	Hetero	INTRON
SBS	Chr7	8207456	G-A	Hetero	INTERGENIC
SBS	Chr7	15127095	A-C	Hetero	INTRON
SBS	Chr8	9554738	G-A	Homo	INTERGENIC
SBS	Chr8	22101152	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr8	24923599	T-C	Hetero	INTERGENIC
SBS	Chr8	29030952	T-C	Homo	INTERGENIC
SBS	Chr9	6102940	C-T	Hetero	INTERGENIC
SBS	Chr9	6102941	A-T	Hetero	INTERGENIC
SBS	Chr9	7738218	A-G	Hetero	INTERGENIC
SBS	Chr9	20401816	C-A	Hetero	INTERGENIC
SBS	Chr9	20945716	G-T	Hetero	INTRON
SBS	Chr9	20945717	G-T	Hetero	INTRON
SBS	Chr10	11347729	A-G	Hetero	INTERGENIC
SBS	Chr10	15072086	A-G	Homo	UTR_3_PRIME
SBS	Chr11	1202155	C-T	Homo	INTERGENIC
SBS	Chr11	11659900	C-T	Hetero	INTERGENIC
SBS	Chr12	13219162	G-A	Hetero	INTERGENIC
SBS	Chr12	13929244	C-A	Hetero	INTERGENIC
SBS	Chr12	18816741	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	559001	663000	103999	23
Deletion	Chr6	1683112	1683118	6
Deletion	Chr3	4721753	4721774	21
Deletion	Chr3	7585156	7585168	12
Deletion	Chr2	8498001	8515000	16999	4
Deletion	Chr1	9609147	9609148	1
Deletion	Chr1	9610650	9610666	16
Deletion	Chr6	9791894	9791910	16
Deletion	Chr5	12191478	12191485	7
Deletion	Chr8	18462750	18462762	12
Deletion	Chr2	20881537	20881539	2
Deletion	Chr9	20896001	20948000	51999	9
Deletion	Chr4	24191001	24223000	31999	2
Deletion	Chr3	30017678	30017680	2
Deletion	Chr2	34399795	34399802	7
Deletion	Chr2	35810532	35810540	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	7972679	8512524
Inversion	Chr2	7987425	8516153	OsKitaake02g108300
Inversion	Chr2	8497915	8516151	OsKitaake02g108300
Inversion	Chr2	8512315	8512537
Inversion	Chr4	23971607	24233875
Inversion	Chr4	24088561	24233873
Inversion	Chr1	29339331	29369520	2
Inversion	Chr1	29339333	29369521	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes