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Mutant Information

Mutant Name	FN2422 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2422 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16995214 C-T Homo INTERGENIC
SBS Chr1 33428492 C-T Homo INTERGENIC
SBS Chr2 10153350 A-G Homo INTERGENIC
SBS Chr2 13181140 A-T Homo NON_SYNONYMOUS_CODING OsKitaake02g146500
SBS Chr2 18269569 G-T Homo INTERGENIC
SBS Chr2 22234124 G-A Hetero INTERGENIC
SBS Chr3 16028093 C-T Homo INTERGENIC
SBS Chr3 23520584 A-G Homo INTERGENIC
SBS Chr3 33699363 C-T Hetero INTERGENIC
SBS Chr4 834372 T-C Hetero INTERGENIC
SBS Chr4 27471948 C-T Homo INTERGENIC
SBS Chr4 28817719 G-A Homo INTERGENIC
SBS Chr5 5110266 G-A Hetero INTERGENIC
SBS Chr5 6869313 G-T Hetero INTERGENIC
SBS Chr5 11943440 A-T Homo INTERGENIC
SBS Chr5 18467699 T-C Hetero INTERGENIC
SBS Chr6 6954659 C-T Hetero INTERGENIC
SBS Chr6 29721799 A-T Homo UTR_3_PRIME
SBS Chr7 3934285 C-T Hetero INTRON
SBS Chr7 20663067 A-G Homo INTERGENIC
SBS Chr7 20666514 T-A Homo INTERGENIC
SBS Chr7 26791686 T-A Homo INTERGENIC
SBS Chr8 19775516 T-C Homo INTRON
SBS Chr8 27003929 C-A Hetero INTERGENIC
SBS Chr8 28959522 T-A Homo INTERGENIC
SBS Chr8 28959523 C-A Homo INTERGENIC
SBS Chr9 1942884 C-T Hetero INTERGENIC
SBS Chr10 4467871 C-T Hetero INTERGENIC
SBS Chr10 5261154 C-A Hetero INTERGENIC
SBS Chr10 19878239 G-A Homo INTERGENIC
SBS Chr11 8614988 T-A Hetero INTERGENIC
SBS Chr11 12691301 C-T Hetero INTERGENIC
SBS Chr11 16947252 A-G Hetero INTERGENIC
SBS Chr12 459981 C-A Homo INTERGENIC
SBS Chr12 4403063 G-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3430723 3430726 3 OsKitaake06g048101
Deletion Chr7 3561001 3650000 88999 11
Deletion Chr3 9471093 9471094 1
Deletion Chr11 10425820 10425824 4
Deletion Chr2 10832745 10832746 1
Deletion Chr11 12632799 12632801 2
Deletion Chr9 15656901 15656902 1
Deletion Chr8 16996920 16996923 3
Deletion Chr4 19718373 19718379 6
Deletion Chr10 19878194 19878195 1
Deletion Chr10 21104687 21104690 3
Deletion Chr6 21745647 21745660 13
Deletion Chr8 22467621 22467627 6
Deletion Chr2 26957473 26957482 9
Deletion Chr6 29862203 29862210 7
Deletion Chr5 29894831 29894832 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 30616456 30616462 5
Insertion Chr3 27689455 27689459 3
Insertion Chr8 6738509 6738512 2
Insertion Chr8 21621116 21621119 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 1449641 2362709 OsKitaake06g016600
Inversion Chr7 24803778 25284132 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 21863969 Chr4 20746239

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16995214	C-T	Homo	INTERGENIC
SBS	Chr1	33428492	C-T	Homo	INTERGENIC
SBS	Chr2	10153350	A-G	Homo	INTERGENIC
SBS	Chr2	13181140	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g146500
SBS	Chr2	18269569	G-T	Homo	INTERGENIC
SBS	Chr2	22234124	G-A	Hetero	INTERGENIC
SBS	Chr3	16028093	C-T	Homo	INTERGENIC
SBS	Chr3	23520584	A-G	Homo	INTERGENIC
SBS	Chr3	33699363	C-T	Hetero	INTERGENIC
SBS	Chr4	834372	T-C	Hetero	INTERGENIC
SBS	Chr4	27471948	C-T	Homo	INTERGENIC
SBS	Chr4	28817719	G-A	Homo	INTERGENIC
SBS	Chr5	5110266	G-A	Hetero	INTERGENIC
SBS	Chr5	6869313	G-T	Hetero	INTERGENIC
SBS	Chr5	11943440	A-T	Homo	INTERGENIC
SBS	Chr5	18467699	T-C	Hetero	INTERGENIC
SBS	Chr6	6954659	C-T	Hetero	INTERGENIC
SBS	Chr6	29721799	A-T	Homo	UTR_3_PRIME
SBS	Chr7	3934285	C-T	Hetero	INTRON
SBS	Chr7	20663067	A-G	Homo	INTERGENIC
SBS	Chr7	20666514	T-A	Homo	INTERGENIC
SBS	Chr7	26791686	T-A	Homo	INTERGENIC
SBS	Chr8	19775516	T-C	Homo	INTRON
SBS	Chr8	27003929	C-A	Hetero	INTERGENIC
SBS	Chr8	28959522	T-A	Homo	INTERGENIC
SBS	Chr8	28959523	C-A	Homo	INTERGENIC
SBS	Chr9	1942884	C-T	Hetero	INTERGENIC
SBS	Chr10	4467871	C-T	Hetero	INTERGENIC
SBS	Chr10	5261154	C-A	Hetero	INTERGENIC
SBS	Chr10	19878239	G-A	Homo	INTERGENIC
SBS	Chr11	8614988	T-A	Hetero	INTERGENIC
SBS	Chr11	12691301	C-T	Hetero	INTERGENIC
SBS	Chr11	16947252	A-G	Hetero	INTERGENIC
SBS	Chr12	459981	C-A	Homo	INTERGENIC
SBS	Chr12	4403063	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3430723	3430726	3	OsKitaake06g048101
Deletion	Chr7	3561001	3650000	88999	11
Deletion	Chr3	9471093	9471094	1
Deletion	Chr11	10425820	10425824	4
Deletion	Chr2	10832745	10832746	1
Deletion	Chr11	12632799	12632801	2
Deletion	Chr9	15656901	15656902	1
Deletion	Chr8	16996920	16996923	3
Deletion	Chr4	19718373	19718379	6
Deletion	Chr10	19878194	19878195	1
Deletion	Chr10	21104687	21104690	3
Deletion	Chr6	21745647	21745660	13
Deletion	Chr8	22467621	22467627	6
Deletion	Chr2	26957473	26957482	9
Deletion	Chr6	29862203	29862210	7
Deletion	Chr5	29894831	29894832	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1449641	2362709	OsKitaake06g016600
Inversion	Chr7	24803778	25284132	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes