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Mutant Information

Mutant Name	FN2423 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2423 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13643596 A-T Hetero INTERGENIC
SBS Chr1 36518412 T-A Homo INTERGENIC
SBS Chr2 792260 G-A Hetero INTRON
SBS Chr2 1712775 A-T Hetero INTERGENIC
SBS Chr2 9553511 G-A Hetero INTERGENIC
SBS Chr2 13157238 G-C Hetero INTERGENIC
SBS Chr2 17527253 C-T Hetero INTERGENIC
SBS Chr2 17918086 T-C Hetero INTERGENIC
SBS Chr2 24828820 C-A Hetero UTR_3_PRIME
SBS Chr2 27214825 C-T Hetero INTERGENIC
SBS Chr2 28253208 C-A Hetero INTERGENIC
SBS Chr3 1818128 T-C Hetero INTERGENIC
SBS Chr3 19460077 C-T Homo INTERGENIC
SBS Chr3 36195729 T-G Hetero INTERGENIC
SBS Chr4 1402046 C-T Homo INTERGENIC
SBS Chr4 15887907 C-A Hetero INTERGENIC
SBS Chr4 26469017 G-A Homo SYNONYMOUS_CODING
SBS Chr5 6060679 A-T Hetero INTERGENIC
SBS Chr5 9582387 C-A Hetero INTERGENIC
SBS Chr5 13347616 C-T Hetero INTERGENIC
SBS Chr5 16732284 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g128200
SBS Chr5 28836735 T-A Hetero INTRON
SBS Chr6 2106686 A-C Hetero INTERGENIC
SBS Chr6 5655973 T-C Hetero INTERGENIC
SBS Chr6 21150323 G-A Hetero INTERGENIC
SBS Chr6 29088840 C-T Hetero INTERGENIC
SBS Chr7 1454318 T-A Homo INTERGENIC
SBS Chr7 8989229 G-T Hetero SYNONYMOUS_CODING
SBS Chr7 9103950 A-G Hetero INTERGENIC
SBS Chr7 10798972 G-A Homo INTERGENIC
SBS Chr7 21521570 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g179500
SBS Chr9 5924164 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 16496784 C-A Hetero INTERGENIC
SBS Chr10 18630235 A-C Hetero INTERGENIC
SBS Chr10 18686510 T-C Hetero INTERGENIC
SBS Chr11 12658183 G-A Hetero INTERGENIC
SBS Chr11 16745534 T-A Hetero INTERGENIC
SBS Chr11 22039540 A-C Hetero INTERGENIC
SBS Chr12 11201752 C-T Homo INTERGENIC
SBS Chr12 11451902 T-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 5151461 5151467 6
Deletion Chr11 14519965 14519972 7
Deletion Chr6 15791489 15791497 8
Deletion Chr12 18313593 18313594 1
Deletion Chr3 19469697 19469703 6
Deletion Chr6 21081592 21081602 10
Deletion Chr8 22025013 22025024 11
Deletion Chr2 24787703 24787709 6
Deletion Chr3 25428984 25428996 12
Deletion Chr4 25764146 25764160 14
Deletion Chr4 26482001 26530000 47999 4
Deletion Chr7 28250001 28271000 20999 4

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18926298 18926301 2
Insertion Chr5 22809292 22809295 2
Insertion Chr6 5377645 5377649 3
Insertion Chr7 618898 618901 2
Insertion Chr7 14159851 14159853 1
Insertion Chr7 15088745 15088749 3
Insertion Chr10 12446349 12446354 4

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 1357951 1789114 OsKitaake04g010200
Inversion Chr4 1357966 1789125 OsKitaake04g010200
Inversion Chr7 28249330 28282811 OsKitaake07g267000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 28269908 Chr2 29803850 OsKitaake07g267300
Translocation Chr7 28282813 Chr2 29803651

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13643596	A-T	Hetero	INTERGENIC
SBS	Chr1	36518412	T-A	Homo	INTERGENIC
SBS	Chr2	792260	G-A	Hetero	INTRON
SBS	Chr2	1712775	A-T	Hetero	INTERGENIC
SBS	Chr2	9553511	G-A	Hetero	INTERGENIC
SBS	Chr2	13157238	G-C	Hetero	INTERGENIC
SBS	Chr2	17527253	C-T	Hetero	INTERGENIC
SBS	Chr2	17918086	T-C	Hetero	INTERGENIC
SBS	Chr2	24828820	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	27214825	C-T	Hetero	INTERGENIC
SBS	Chr2	28253208	C-A	Hetero	INTERGENIC
SBS	Chr3	1818128	T-C	Hetero	INTERGENIC
SBS	Chr3	19460077	C-T	Homo	INTERGENIC
SBS	Chr3	36195729	T-G	Hetero	INTERGENIC
SBS	Chr4	1402046	C-T	Homo	INTERGENIC
SBS	Chr4	15887907	C-A	Hetero	INTERGENIC
SBS	Chr4	26469017	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	6060679	A-T	Hetero	INTERGENIC
SBS	Chr5	9582387	C-A	Hetero	INTERGENIC
SBS	Chr5	13347616	C-T	Hetero	INTERGENIC
SBS	Chr5	16732284	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g128200
SBS	Chr5	28836735	T-A	Hetero	INTRON
SBS	Chr6	2106686	A-C	Hetero	INTERGENIC
SBS	Chr6	5655973	T-C	Hetero	INTERGENIC
SBS	Chr6	21150323	G-A	Hetero	INTERGENIC
SBS	Chr6	29088840	C-T	Hetero	INTERGENIC
SBS	Chr7	1454318	T-A	Homo	INTERGENIC
SBS	Chr7	8989229	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	9103950	A-G	Hetero	INTERGENIC
SBS	Chr7	10798972	G-A	Homo	INTERGENIC
SBS	Chr7	21521570	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g179500
SBS	Chr9	5924164	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	16496784	C-A	Hetero	INTERGENIC
SBS	Chr10	18630235	A-C	Hetero	INTERGENIC
SBS	Chr10	18686510	T-C	Hetero	INTERGENIC
SBS	Chr11	12658183	G-A	Hetero	INTERGENIC
SBS	Chr11	16745534	T-A	Hetero	INTERGENIC
SBS	Chr11	22039540	A-C	Hetero	INTERGENIC
SBS	Chr12	11201752	C-T	Homo	INTERGENIC
SBS	Chr12	11451902	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	5151461	5151467	6
Deletion	Chr11	14519965	14519972	7
Deletion	Chr6	15791489	15791497	8
Deletion	Chr12	18313593	18313594	1
Deletion	Chr3	19469697	19469703	6
Deletion	Chr6	21081592	21081602	10
Deletion	Chr8	22025013	22025024	11
Deletion	Chr2	24787703	24787709	6
Deletion	Chr3	25428984	25428996	12
Deletion	Chr4	25764146	25764160	14
Deletion	Chr4	26482001	26530000	47999	4
Deletion	Chr7	28250001	28271000	20999	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1357951	1789114	OsKitaake04g010200
Inversion	Chr4	1357966	1789125	OsKitaake04g010200
Inversion	Chr7	28249330	28282811	OsKitaake07g267000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes