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Mutant Information

Mutant Name	FN2424 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2424 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7233538 C-A Hetero INTRON
SBS Chr1 7887159 T-A Homo INTERGENIC
SBS Chr1 26518136 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g258200
SBS Chr1 41550295 C-T Hetero INTRON
SBS Chr1 41832798 G-A Hetero INTRON
SBS Chr3 14427245 C-T Hetero INTERGENIC
SBS Chr3 29845380 G-A Hetero INTERGENIC
SBS Chr3 35717402 T-C Homo INTERGENIC
SBS Chr4 6756685 C-T Hetero INTERGENIC
SBS Chr5 5634488 T-A Hetero INTERGENIC
SBS Chr5 21078216 G-A Hetero INTERGENIC
SBS Chr6 5434479 C-T Hetero INTERGENIC
SBS Chr6 9517869 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g112400
SBS Chr6 9683505 T-A Homo INTERGENIC
SBS Chr6 15189601 G-T Hetero INTERGENIC
SBS Chr7 4491897 C-A Hetero INTERGENIC
SBS Chr7 7348519 G-A Hetero INTERGENIC
SBS Chr7 14768758 T-A Hetero INTERGENIC
SBS Chr8 27699894 T-C Hetero INTERGENIC
SBS Chr9 13131408 C-T Hetero INTERGENIC
SBS Chr10 1337945 C-A Hetero INTERGENIC
SBS Chr10 12216380 T-C Hetero INTERGENIC
SBS Chr11 10185885 T-C Hetero INTERGENIC
SBS Chr11 13388686 C-T Homo INTERGENIC
SBS Chr11 25008610 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2327510 2327512 2
Deletion Chr1 8370180 8370190 10
Deletion Chr3 14203117 14203118 1
Deletion Chr12 15895001 15942000 46999
Deletion Chr12 16181001 16285000 103999 8
Deletion Chr12 16344001 16503000 158999 5
Deletion Chr2 18748703 18748705 2
Deletion Chr11 23873664 23873665 1
Deletion Chr7 25425414 25425416 2
Deletion Chr1 27060146 27060147 1
Deletion Chr8 27139509 27139510 1
Deletion Chr2 36526564 36526568 4
Deletion Chr1 41673762 41673764 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 19379829 19379832 2
Insertion Chr12 4686516 4686520 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 20963276 21181266 OsKitaake09g179500
Inversion Chr9 21017188 21181258 OsKitaake09g180300

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 470105 Chr3 19443824
Translocation Chr3 19443967 Chr1 40661619 OsKitaake01g442100
Translocation Chr9 20963263 Chr3 1973254 2
Translocation Chr9 21017217 Chr3 1973274 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7233538	C-A	Hetero	INTRON
SBS	Chr1	7887159	T-A	Homo	INTERGENIC
SBS	Chr1	26518136	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g258200
SBS	Chr1	41550295	C-T	Hetero	INTRON
SBS	Chr1	41832798	G-A	Hetero	INTRON
SBS	Chr3	14427245	C-T	Hetero	INTERGENIC
SBS	Chr3	29845380	G-A	Hetero	INTERGENIC
SBS	Chr3	35717402	T-C	Homo	INTERGENIC
SBS	Chr4	6756685	C-T	Hetero	INTERGENIC
SBS	Chr5	5634488	T-A	Hetero	INTERGENIC
SBS	Chr5	21078216	G-A	Hetero	INTERGENIC
SBS	Chr6	5434479	C-T	Hetero	INTERGENIC
SBS	Chr6	9517869	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g112400
SBS	Chr6	9683505	T-A	Homo	INTERGENIC
SBS	Chr6	15189601	G-T	Hetero	INTERGENIC
SBS	Chr7	4491897	C-A	Hetero	INTERGENIC
SBS	Chr7	7348519	G-A	Hetero	INTERGENIC
SBS	Chr7	14768758	T-A	Hetero	INTERGENIC
SBS	Chr8	27699894	T-C	Hetero	INTERGENIC
SBS	Chr9	13131408	C-T	Hetero	INTERGENIC
SBS	Chr10	1337945	C-A	Hetero	INTERGENIC
SBS	Chr10	12216380	T-C	Hetero	INTERGENIC
SBS	Chr11	10185885	T-C	Hetero	INTERGENIC
SBS	Chr11	13388686	C-T	Homo	INTERGENIC
SBS	Chr11	25008610	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2327510	2327512	2
Deletion	Chr1	8370180	8370190	10
Deletion	Chr3	14203117	14203118	1
Deletion	Chr12	15895001	15942000	46999
Deletion	Chr12	16181001	16285000	103999	8
Deletion	Chr12	16344001	16503000	158999	5
Deletion	Chr2	18748703	18748705	2
Deletion	Chr11	23873664	23873665	1
Deletion	Chr7	25425414	25425416	2
Deletion	Chr1	27060146	27060147	1
Deletion	Chr8	27139509	27139510	1
Deletion	Chr2	36526564	36526568	4
Deletion	Chr1	41673762	41673764	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	20963276	21181266	OsKitaake09g179500
Inversion	Chr9	21017188	21181258	OsKitaake09g180300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes