Search Kitaake

Mutant Information

Mutant Name	FN2426 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2426 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 63

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 434855 G-A Homo INTRON
SBS Chr1 2078250 A-G Homo START_GAINED
SBS Chr1 20376253 A-G Hetero INTERGENIC
SBS Chr1 21378659 G-A Hetero INTERGENIC
SBS Chr1 24369743 C-A Hetero INTERGENIC
SBS Chr1 30993528 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g308800
SBS Chr1 36667426 C-T Hetero INTERGENIC
SBS Chr2 3387472 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g048900
SBS Chr2 4940578 C-A Hetero INTERGENIC
SBS Chr2 11189532 T-C Hetero INTERGENIC
SBS Chr2 30427199 G-A Hetero INTERGENIC
SBS Chr3 12276102 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g165700
SBS Chr3 23867531 G-A Homo INTERGENIC
SBS Chr3 24568825 G-T Hetero INTERGENIC
SBS Chr3 31234352 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g328700
SBS Chr3 31887412 C-T Homo INTERGENIC
SBS Chr3 31887421 C-T Homo INTERGENIC
SBS Chr3 32649756 T-A Homo INTERGENIC
SBS Chr4 5600991 G-A Hetero INTERGENIC
SBS Chr4 18667668 C-A Homo INTERGENIC
SBS Chr4 19311278 A-C Hetero INTERGENIC
SBS Chr5 13294197 C-A Hetero INTERGENIC
SBS Chr5 14625546 A-G Hetero INTERGENIC
SBS Chr5 20224921 A-C Homo UTR_3_PRIME
SBS Chr5 20668451 C-T Homo INTERGENIC
SBS Chr5 24317449 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g217300
SBS Chr5 26926392 A-G Hetero UTR_5_PRIME
SBS Chr5 30214068 G-T Hetero INTERGENIC
SBS Chr6 3445006 G-T Hetero UTR_3_PRIME
SBS Chr6 14229288 G-T Hetero INTERGENIC
SBS Chr6 15373832 G-A Hetero INTERGENIC
SBS Chr6 16075892 A-G Hetero INTERGENIC
SBS Chr6 22489811 G-T Hetero INTERGENIC
SBS Chr6 24474300 G-A Hetero INTERGENIC
SBS Chr6 26728158 C-T Hetero INTERGENIC
SBS Chr7 7951628 T-A Hetero INTRON
SBS Chr7 7987218 C-T Hetero INTERGENIC
SBS Chr7 9352064 T-C Hetero INTERGENIC
SBS Chr7 14674478 G-A Hetero INTERGENIC
SBS Chr7 18570326 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g151100
SBS Chr7 27011619 A-C Hetero INTRON
SBS Chr7 28795199 G-A Hetero INTRON
SBS Chr7 29601718 T-C Hetero INTRON
SBS Chr8 784759 T-A Homo INTERGENIC
SBS Chr8 7515692 G-A Hetero INTERGENIC
SBS Chr8 11537063 T-A Hetero INTERGENIC
SBS Chr8 23864623 T-C Hetero INTERGENIC
SBS Chr8 25823686 A-G Hetero INTERGENIC
SBS Chr9 7125124 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g042000
SBS Chr9 14326916 C-G Hetero INTERGENIC
SBS Chr9 18970573 C-A Hetero INTERGENIC
SBS Chr10 5543285 G-C Hetero INTERGENIC
SBS Chr10 5567726 C-A Homo INTERGENIC
SBS Chr10 5781478 A-G Hetero INTERGENIC
SBS Chr10 15174272 A-C Homo INTERGENIC
SBS Chr11 2592155 G-T Hetero INTERGENIC
SBS Chr11 10888361 C-A Homo INTERGENIC
SBS Chr11 20114795 G-T Homo INTERGENIC
SBS Chr11 25952487 T-C Homo INTERGENIC
SBS Chr12 11870648 T-C Hetero INTERGENIC
SBS Chr12 15043564 C-T Hetero INTERGENIC
SBS Chr12 21600271 T-A Hetero INTERGENIC
SBS Chr12 26502570 A-T Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 774150 774154 4 OsKitaake01g008000
Deletion Chr1 1022209 1022216 7
Deletion Chr11 1641648 1641652 4
Deletion Chr8 2610684 2610685 1
Deletion Chr3 3888745 3888751 6
Deletion Chr6 6423001 6434000 10999
Deletion Chr11 7295155 7295161 6
Deletion Chr3 7310092 7310099 7
Deletion Chr4 7449107 7449127 20
Deletion Chr3 8580405 8580417 12 OsKitaake03g117700
Deletion Chr12 9704150 9704152 2
Deletion Chr8 11521196 11521198 2 OsKitaake08g102000
Deletion Chr8 11587850 11587855 5
Deletion Chr5 13963018 13963019 1
Deletion Chr5 14516267 14516289 22
Deletion Chr9 14905180 14905198 18
Deletion Chr6 16746787 16746788 1
Deletion Chr2 16890680 16890688 8
Deletion Chr12 18319174 18319184 10
Deletion Chr10 19257001 19283000 25999 OsKitaake10g139300
Deletion Chr5 21825633 21825646 13
Deletion Chr8 24474827 24474830 3 OsKitaake08g189800
Deletion Chr1 26156499 26156510 11
Deletion Chr6 28545959 28545969 10
Deletion Chr1 34620807 34620838 31
Deletion Chr3 37064262 37064263 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20832643 20832646 2
Insertion Chr6 24012680 24012683 2
Insertion Chr8 3977787 3977789 1
Insertion Chr8 11766577 11766580 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 2056183 2176776 OsKitaake01g025800
Inversion Chr1 2056191 2176788 OsKitaake01g025800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	434855	G-A	Homo	INTRON
SBS	Chr1	2078250	A-G	Homo	START_GAINED
SBS	Chr1	20376253	A-G	Hetero	INTERGENIC
SBS	Chr1	21378659	G-A	Hetero	INTERGENIC
SBS	Chr1	24369743	C-A	Hetero	INTERGENIC
SBS	Chr1	30993528	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g308800
SBS	Chr1	36667426	C-T	Hetero	INTERGENIC
SBS	Chr2	3387472	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g048900
SBS	Chr2	4940578	C-A	Hetero	INTERGENIC
SBS	Chr2	11189532	T-C	Hetero	INTERGENIC
SBS	Chr2	30427199	G-A	Hetero	INTERGENIC
SBS	Chr3	12276102	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g165700
SBS	Chr3	23867531	G-A	Homo	INTERGENIC
SBS	Chr3	24568825	G-T	Hetero	INTERGENIC
SBS	Chr3	31234352	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g328700
SBS	Chr3	31887412	C-T	Homo	INTERGENIC
SBS	Chr3	31887421	C-T	Homo	INTERGENIC
SBS	Chr3	32649756	T-A	Homo	INTERGENIC
SBS	Chr4	5600991	G-A	Hetero	INTERGENIC
SBS	Chr4	18667668	C-A	Homo	INTERGENIC
SBS	Chr4	19311278	A-C	Hetero	INTERGENIC
SBS	Chr5	13294197	C-A	Hetero	INTERGENIC
SBS	Chr5	14625546	A-G	Hetero	INTERGENIC
SBS	Chr5	20224921	A-C	Homo	UTR_3_PRIME
SBS	Chr5	20668451	C-T	Homo	INTERGENIC
SBS	Chr5	24317449	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g217300
SBS	Chr5	26926392	A-G	Hetero	UTR_5_PRIME
SBS	Chr5	30214068	G-T	Hetero	INTERGENIC
SBS	Chr6	3445006	G-T	Hetero	UTR_3_PRIME
SBS	Chr6	14229288	G-T	Hetero	INTERGENIC
SBS	Chr6	15373832	G-A	Hetero	INTERGENIC
SBS	Chr6	16075892	A-G	Hetero	INTERGENIC
SBS	Chr6	22489811	G-T	Hetero	INTERGENIC
SBS	Chr6	24474300	G-A	Hetero	INTERGENIC
SBS	Chr6	26728158	C-T	Hetero	INTERGENIC
SBS	Chr7	7951628	T-A	Hetero	INTRON
SBS	Chr7	7987218	C-T	Hetero	INTERGENIC
SBS	Chr7	9352064	T-C	Hetero	INTERGENIC
SBS	Chr7	14674478	G-A	Hetero	INTERGENIC
SBS	Chr7	18570326	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g151100
SBS	Chr7	27011619	A-C	Hetero	INTRON
SBS	Chr7	28795199	G-A	Hetero	INTRON
SBS	Chr7	29601718	T-C	Hetero	INTRON
SBS	Chr8	784759	T-A	Homo	INTERGENIC
SBS	Chr8	7515692	G-A	Hetero	INTERGENIC
SBS	Chr8	11537063	T-A	Hetero	INTERGENIC
SBS	Chr8	23864623	T-C	Hetero	INTERGENIC
SBS	Chr8	25823686	A-G	Hetero	INTERGENIC
SBS	Chr9	7125124	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g042000
SBS	Chr9	14326916	C-G	Hetero	INTERGENIC
SBS	Chr9	18970573	C-A	Hetero	INTERGENIC
SBS	Chr10	5543285	G-C	Hetero	INTERGENIC
SBS	Chr10	5567726	C-A	Homo	INTERGENIC
SBS	Chr10	5781478	A-G	Hetero	INTERGENIC
SBS	Chr10	15174272	A-C	Homo	INTERGENIC
SBS	Chr11	2592155	G-T	Hetero	INTERGENIC
SBS	Chr11	10888361	C-A	Homo	INTERGENIC
SBS	Chr11	20114795	G-T	Homo	INTERGENIC
SBS	Chr11	25952487	T-C	Homo	INTERGENIC
SBS	Chr12	11870648	T-C	Hetero	INTERGENIC
SBS	Chr12	15043564	C-T	Hetero	INTERGENIC
SBS	Chr12	21600271	T-A	Hetero	INTERGENIC
SBS	Chr12	26502570	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	774150	774154	4	OsKitaake01g008000
Deletion	Chr1	1022209	1022216	7
Deletion	Chr11	1641648	1641652	4
Deletion	Chr8	2610684	2610685	1
Deletion	Chr3	3888745	3888751	6
Deletion	Chr6	6423001	6434000	10999
Deletion	Chr11	7295155	7295161	6
Deletion	Chr3	7310092	7310099	7
Deletion	Chr4	7449107	7449127	20
Deletion	Chr3	8580405	8580417	12	OsKitaake03g117700
Deletion	Chr12	9704150	9704152	2
Deletion	Chr8	11521196	11521198	2	OsKitaake08g102000
Deletion	Chr8	11587850	11587855	5
Deletion	Chr5	13963018	13963019	1
Deletion	Chr5	14516267	14516289	22
Deletion	Chr9	14905180	14905198	18
Deletion	Chr6	16746787	16746788	1
Deletion	Chr2	16890680	16890688	8
Deletion	Chr12	18319174	18319184	10
Deletion	Chr10	19257001	19283000	25999	OsKitaake10g139300
Deletion	Chr5	21825633	21825646	13
Deletion	Chr8	24474827	24474830	3	OsKitaake08g189800
Deletion	Chr1	26156499	26156510	11
Deletion	Chr6	28545959	28545969	10
Deletion	Chr1	34620807	34620838	31
Deletion	Chr3	37064262	37064263	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	2056183	2176776	OsKitaake01g025800
Inversion	Chr1	2056191	2176788	OsKitaake01g025800

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes