Search Kitaake

Mutant Information

Mutant Name	FN2428 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2428 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27303459 T-C Homo INTERGENIC
SBS Chr1 35796907 G-A Hetero INTERGENIC
SBS Chr1 35968663 G-A Hetero INTERGENIC
SBS Chr2 3028712 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g043400
SBS Chr2 19136259 G-A Homo INTERGENIC
SBS Chr2 19481479 G-T Homo INTERGENIC
SBS Chr2 19481480 A-T Homo INTERGENIC
SBS Chr2 35618832 C-T Hetero INTERGENIC
SBS Chr3 12868307 C-T Hetero INTERGENIC
SBS Chr4 12334539 A-G Hetero INTERGENIC
SBS Chr4 19577807 G-A Hetero INTERGENIC
SBS Chr4 32006461 T-G Homo INTERGENIC
SBS Chr4 32618985 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g262000
SBS Chr5 1087042 G-A Hetero INTRON
SBS Chr5 10241380 C-T Hetero INTERGENIC
SBS Chr6 15511285 A-G Hetero INTERGENIC
SBS Chr6 20865523 C-T Hetero UTR_5_PRIME
SBS Chr6 24205135 T-A Hetero INTERGENIC
SBS Chr6 27704278 C-A Hetero INTERGENIC
SBS Chr6 30897089 G-A Hetero INTERGENIC
SBS Chr7 441747 G-T Hetero INTERGENIC
SBS Chr7 9058993 A-T Homo INTERGENIC
SBS Chr7 10225231 G-C Hetero INTERGENIC
SBS Chr7 16781684 A-G Homo INTRON
SBS Chr8 7768437 A-C Hetero INTRON
SBS Chr8 7768455 T-C Hetero INTRON
SBS Chr8 27479109 G-A Hetero INTERGENIC
SBS Chr9 1365394 T-A Hetero INTERGENIC
SBS Chr9 2906564 A-T Hetero INTERGENIC
SBS Chr9 14397264 A-T Hetero INTERGENIC
SBS Chr9 14523073 A-T Hetero INTERGENIC
SBS Chr9 15085235 C-T Hetero INTERGENIC
SBS Chr10 2749401 C-T Hetero INTERGENIC
SBS Chr10 18407477 G-T Hetero INTERGENIC
SBS Chr11 4031603 T-A Hetero INTERGENIC
SBS Chr11 7651608 C-G Homo INTERGENIC
SBS Chr11 24064693 G-A Hetero INTERGENIC
SBS Chr11 26759589 C-A Hetero INTERGENIC
SBS Chr11 28364690 C-G Hetero INTERGENIC
SBS Chr12 11408136 G-A Hetero INTERGENIC
SBS Chr12 14435773 C-T Hetero INTERGENIC
SBS Chr12 14624018 C-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1017400 1017402 2
Deletion Chr2 4322958 4322960 2
Deletion Chr9 8779925 8780016 91
Deletion Chr11 8872001 8910000 37999 OsKitaake11g095250
Deletion Chr12 10532001 10671000 138999 9
Deletion Chr12 10684001 10778000 93999 4
Deletion Chr9 14053567 14053605 38
Deletion Chr10 23603899 23603903 4
Deletion Chr6 23816001 23846000 29999 4
Deletion Chr7 28701575 28701577 2
Deletion Chr8 29248001 29322000 73999 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15278059 15278062 2
Insertion Chr4 16396813 16396816 2
Insertion Chr7 375046 375049 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 10442682 11054968 2
Inversion Chr8 29265439 29266098 OsKitaake08g255100

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8344628 Chr9 9957220 OsKitaake12g086350
Translocation Chr12 8345725 Chr9 9957210
Translocation Chr8 9981734 Chr6 23817341 OsKitaake06g209900
Translocation Chr12 10498717 Chr7 18251735 OsKitaake07g147800
Translocation Chr12 10498889 Chr7 18251734 OsKitaake07g147800
Translocation Chr12 10499918 Chr1 35599601
Translocation Chr11 11050500 Chr6 23816580 OsKitaake06g209900
Translocation Chr8 26953675 Chr2 23163665 OsKitaake02g226600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27303459	T-C	Homo	INTERGENIC
SBS	Chr1	35796907	G-A	Hetero	INTERGENIC
SBS	Chr1	35968663	G-A	Hetero	INTERGENIC
SBS	Chr2	3028712	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g043400
SBS	Chr2	19136259	G-A	Homo	INTERGENIC
SBS	Chr2	19481479	G-T	Homo	INTERGENIC
SBS	Chr2	19481480	A-T	Homo	INTERGENIC
SBS	Chr2	35618832	C-T	Hetero	INTERGENIC
SBS	Chr3	12868307	C-T	Hetero	INTERGENIC
SBS	Chr4	12334539	A-G	Hetero	INTERGENIC
SBS	Chr4	19577807	G-A	Hetero	INTERGENIC
SBS	Chr4	32006461	T-G	Homo	INTERGENIC
SBS	Chr4	32618985	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g262000
SBS	Chr5	1087042	G-A	Hetero	INTRON
SBS	Chr5	10241380	C-T	Hetero	INTERGENIC
SBS	Chr6	15511285	A-G	Hetero	INTERGENIC
SBS	Chr6	20865523	C-T	Hetero	UTR_5_PRIME
SBS	Chr6	24205135	T-A	Hetero	INTERGENIC
SBS	Chr6	27704278	C-A	Hetero	INTERGENIC
SBS	Chr6	30897089	G-A	Hetero	INTERGENIC
SBS	Chr7	441747	G-T	Hetero	INTERGENIC
SBS	Chr7	9058993	A-T	Homo	INTERGENIC
SBS	Chr7	10225231	G-C	Hetero	INTERGENIC
SBS	Chr7	16781684	A-G	Homo	INTRON
SBS	Chr8	7768437	A-C	Hetero	INTRON
SBS	Chr8	7768455	T-C	Hetero	INTRON
SBS	Chr8	27479109	G-A	Hetero	INTERGENIC
SBS	Chr9	1365394	T-A	Hetero	INTERGENIC
SBS	Chr9	2906564	A-T	Hetero	INTERGENIC
SBS	Chr9	14397264	A-T	Hetero	INTERGENIC
SBS	Chr9	14523073	A-T	Hetero	INTERGENIC
SBS	Chr9	15085235	C-T	Hetero	INTERGENIC
SBS	Chr10	2749401	C-T	Hetero	INTERGENIC
SBS	Chr10	18407477	G-T	Hetero	INTERGENIC
SBS	Chr11	4031603	T-A	Hetero	INTERGENIC
SBS	Chr11	7651608	C-G	Homo	INTERGENIC
SBS	Chr11	24064693	G-A	Hetero	INTERGENIC
SBS	Chr11	26759589	C-A	Hetero	INTERGENIC
SBS	Chr11	28364690	C-G	Hetero	INTERGENIC
SBS	Chr12	11408136	G-A	Hetero	INTERGENIC
SBS	Chr12	14435773	C-T	Hetero	INTERGENIC
SBS	Chr12	14624018	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1017400	1017402	2
Deletion	Chr2	4322958	4322960	2
Deletion	Chr9	8779925	8780016	91
Deletion	Chr11	8872001	8910000	37999	OsKitaake11g095250
Deletion	Chr12	10532001	10671000	138999	9
Deletion	Chr12	10684001	10778000	93999	4
Deletion	Chr9	14053567	14053605	38
Deletion	Chr10	23603899	23603903	4
Deletion	Chr6	23816001	23846000	29999	4
Deletion	Chr7	28701575	28701577	2
Deletion	Chr8	29248001	29322000	73999	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	10442682	11054968	2
Inversion	Chr8	29265439	29266098	OsKitaake08g255100

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes