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Mutant Information

Mutant Name	FN2429 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2429 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5566276 G-A Hetero INTERGENIC
SBS Chr1 7114715 T-C Hetero INTERGENIC
SBS Chr1 8336522 A-G Hetero INTERGENIC
SBS Chr1 13845588 T-C Homo INTERGENIC
SBS Chr1 15200633 G-A Hetero INTERGENIC
SBS Chr2 2349392 C-T Hetero INTERGENIC
SBS Chr2 7181282 G-T Hetero INTERGENIC
SBS Chr2 20265515 C-G Homo INTRON
SBS Chr2 27123842 T-A Hetero INTRON
SBS Chr2 31125287 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 29407336 A-G Homo UTR_5_PRIME
SBS Chr3 33965275 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g366600
SBS Chr3 33965279 T-C Homo SPLICE_SITE_DONOR OsKitaake03g366600
SBS Chr3 37440083 C-T Homo INTERGENIC
SBS Chr4 4267745 C-T Homo INTERGENIC
SBS Chr4 6709936 T-C Hetero INTERGENIC
SBS Chr4 12180726 A-G Homo INTERGENIC
SBS Chr4 14533311 A-C Hetero INTERGENIC
SBS Chr4 17136434 G-A Hetero INTRON
SBS Chr4 19932443 G-A Hetero INTERGENIC
SBS Chr4 30124356 T-C Hetero INTRON
SBS Chr5 6734785 G-A Homo INTERGENIC
SBS Chr5 18055053 C-T Homo INTERGENIC
SBS Chr5 21169460 T-C Homo SYNONYMOUS_CODING
SBS Chr5 21169471 G-C Homo NON_SYNONYMOUS_CODING OsKitaake05g170600
SBS Chr5 21169472 G-A Homo SYNONYMOUS_CODING
SBS Chr5 21169475 G-A Homo SYNONYMOUS_CODING
SBS Chr6 4501861 C-T Hetero INTERGENIC
SBS Chr6 21090040 A-T Hetero INTERGENIC
SBS Chr7 293185 G-A Hetero INTERGENIC
SBS Chr7 14485773 A-G Hetero INTERGENIC
SBS Chr7 29268148 A-C Homo INTERGENIC
SBS Chr8 8273452 C-T Homo INTERGENIC
SBS Chr8 19929664 G-A Hetero INTERGENIC
SBS Chr8 20274433 G-A Hetero INTRON
SBS Chr8 20477426 T-C Hetero INTERGENIC
SBS Chr8 21004813 C-A Hetero INTERGENIC
SBS Chr8 23238736 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g178700
SBS Chr8 28494335 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 217887 G-T Hetero INTERGENIC
SBS Chr9 5676698 G-T Hetero INTERGENIC
SBS Chr9 8912936 T-C Homo INTERGENIC
SBS Chr9 11067300 A-T Homo INTERGENIC
SBS Chr9 19496047 G-T Hetero INTRON
SBS Chr11 23404034 C-T Hetero INTERGENIC
SBS Chr11 28954483 G-A Hetero INTERGENIC
SBS Chr12 11134910 A-C Hetero INTERGENIC
SBS Chr12 20469045 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 954434 954445 11
Deletion Chr1 1307190 1307192 2
Deletion Chr10 1660001 1823000 162999 15
Deletion Chr4 1722193 1722198 5
Deletion Chr6 2138776 2138778 2
Deletion Chr4 4197001 4212000 14999 2
Deletion Chr3 7249494 7249503 9
Deletion Chr1 7293376 7293381 5
Deletion Chr9 8759494 8759509 15
Deletion Chr2 9158001 9423000 264999 14
Deletion Chr6 12477818 12477822 4
Deletion Chr11 13157001 13183000 25999 OsKitaake11g114600
Deletion Chr9 17008620 17008628 8
Deletion Chr5 19970784 19970794 10
Deletion Chr8 20476605 20476616 11
Deletion Chr11 23414827 23414833 6
Deletion Chr3 24076372 24076374 2
Deletion Chr5 25644981 25645003 22
Deletion Chr5 25781176 25781184 8
Deletion Chr7 28776560 28776567 7
Deletion Chr8 29210104 29210108 4
Deletion Chr1 29542017 29542018 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4101192 4101195 2
Insertion Chr1 23591868 23591871 2
Insertion Chr1 32299490 32299493 2
Insertion Chr6 18279771 18279775 3
Insertion Chr7 28702050 28702053 2
Insertion Chr12 4918134 4918141 6

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 24547988 24624526 OsKitaake08g191800
Inversion Chr8 24555035 24624537 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2660065 Chr4 4196408 OsKitaake04g020500
Translocation Chr10 2660073 Chr4 4212242
Translocation Chr12 3806159 Chr8 24547988
Translocation Chr12 3806161 Chr8 24555012 OsKitaake08g191100
Translocation Chr12 9633313 Chr7 21088605
Translocation Chr12 9633323 Chr7 21087362

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5566276	G-A	Hetero	INTERGENIC
SBS	Chr1	7114715	T-C	Hetero	INTERGENIC
SBS	Chr1	8336522	A-G	Hetero	INTERGENIC
SBS	Chr1	13845588	T-C	Homo	INTERGENIC
SBS	Chr1	15200633	G-A	Hetero	INTERGENIC
SBS	Chr2	2349392	C-T	Hetero	INTERGENIC
SBS	Chr2	7181282	G-T	Hetero	INTERGENIC
SBS	Chr2	20265515	C-G	Homo	INTRON
SBS	Chr2	27123842	T-A	Hetero	INTRON
SBS	Chr2	31125287	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	29407336	A-G	Homo	UTR_5_PRIME
SBS	Chr3	33965275	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g366600
SBS	Chr3	33965279	T-C	Homo	SPLICE_SITE_DONOR	OsKitaake03g366600
SBS	Chr3	37440083	C-T	Homo	INTERGENIC
SBS	Chr4	4267745	C-T	Homo	INTERGENIC
SBS	Chr4	6709936	T-C	Hetero	INTERGENIC
SBS	Chr4	12180726	A-G	Homo	INTERGENIC
SBS	Chr4	14533311	A-C	Hetero	INTERGENIC
SBS	Chr4	17136434	G-A	Hetero	INTRON
SBS	Chr4	19932443	G-A	Hetero	INTERGENIC
SBS	Chr4	30124356	T-C	Hetero	INTRON
SBS	Chr5	6734785	G-A	Homo	INTERGENIC
SBS	Chr5	18055053	C-T	Homo	INTERGENIC
SBS	Chr5	21169460	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr5	21169471	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g170600
SBS	Chr5	21169472	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	21169475	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	4501861	C-T	Hetero	INTERGENIC
SBS	Chr6	21090040	A-T	Hetero	INTERGENIC
SBS	Chr7	293185	G-A	Hetero	INTERGENIC
SBS	Chr7	14485773	A-G	Hetero	INTERGENIC
SBS	Chr7	29268148	A-C	Homo	INTERGENIC
SBS	Chr8	8273452	C-T	Homo	INTERGENIC
SBS	Chr8	19929664	G-A	Hetero	INTERGENIC
SBS	Chr8	20274433	G-A	Hetero	INTRON
SBS	Chr8	20477426	T-C	Hetero	INTERGENIC
SBS	Chr8	21004813	C-A	Hetero	INTERGENIC
SBS	Chr8	23238736	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g178700
SBS	Chr8	28494335	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	217887	G-T	Hetero	INTERGENIC
SBS	Chr9	5676698	G-T	Hetero	INTERGENIC
SBS	Chr9	8912936	T-C	Homo	INTERGENIC
SBS	Chr9	11067300	A-T	Homo	INTERGENIC
SBS	Chr9	19496047	G-T	Hetero	INTRON
SBS	Chr11	23404034	C-T	Hetero	INTERGENIC
SBS	Chr11	28954483	G-A	Hetero	INTERGENIC
SBS	Chr12	11134910	A-C	Hetero	INTERGENIC
SBS	Chr12	20469045	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	954434	954445	11
Deletion	Chr1	1307190	1307192	2
Deletion	Chr10	1660001	1823000	162999	15
Deletion	Chr4	1722193	1722198	5
Deletion	Chr6	2138776	2138778	2
Deletion	Chr4	4197001	4212000	14999	2
Deletion	Chr3	7249494	7249503	9
Deletion	Chr1	7293376	7293381	5
Deletion	Chr9	8759494	8759509	15
Deletion	Chr2	9158001	9423000	264999	14
Deletion	Chr6	12477818	12477822	4
Deletion	Chr11	13157001	13183000	25999	OsKitaake11g114600
Deletion	Chr9	17008620	17008628	8
Deletion	Chr5	19970784	19970794	10
Deletion	Chr8	20476605	20476616	11
Deletion	Chr11	23414827	23414833	6
Deletion	Chr3	24076372	24076374	2
Deletion	Chr5	25644981	25645003	22
Deletion	Chr5	25781176	25781184	8
Deletion	Chr7	28776560	28776567	7
Deletion	Chr8	29210104	29210108	4
Deletion	Chr1	29542017	29542018	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	24547988	24624526	OsKitaake08g191800
Inversion	Chr8	24555035	24624537	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes