Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN2430 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2430 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 41
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 239598 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16058461 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 20607599 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27240609 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 32005928 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34070422 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 34699666 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 3664740 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 4342098 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 14890048 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 24904699 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 13275938 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 17581648 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21213599 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21221139 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 29615925 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31485352 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g331700 |
| SBS | Chr4 | 3686357 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 8981598 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9012238 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 13543399 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 23305415 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 25617110 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 32074318 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3834831 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 8966194 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g084500 |
| SBS | Chr5 | 29001369 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 217681 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 8901871 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 18306334 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 23476362 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16621028 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 22392864 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4527768 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20589450 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22927340 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25822903 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 4438648 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13839267 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 26137333 | G-T | Homo | INTRON | |
| SBS | Chr12 | 26137334 | C-T | Homo | INTRON |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1506689 | 1506694 | 5 | |
| Deletion | Chr10 | 3567382 | 3567473 | 91 | |
| Deletion | Chr5 | 4846865 | 4846866 | 1 | |
| Deletion | Chr11 | 5470794 | 5470801 | 7 | |
| Deletion | Chr5 | 9605639 | 9605644 | 5 | |
| Deletion | Chr10 | 10637115 | 10637119 | 4 | |
| Deletion | Chr4 | 10865265 | 10865268 | 3 | |
| Deletion | Chr10 | 17303809 | 17303810 | 1 | |
| Deletion | Chr11 | 18698586 | 18698587 | 1 | OsKitaake11g145200 |
| Deletion | Chr9 | 20434013 | 20434022 | 9 | |
| Deletion | Chr7 | 28628691 | 28628700 | 9 | |
| Deletion | Chr7 | 28797533 | 28797535 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 15278316 | 15278319 | 2 | |
| Insertion | Chr11 | 3136342 | 3136345 | 2 | |
| Insertion | Chr12 | 3649348 | 3649351 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 8192454 | Chr1 | 15953190 |