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Mutant Information

Mutant Name	FN2431 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2431 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 30806983 C-G Homo INTRON
SBS Chr1 32859117 T-G Homo NON_SYNONYMOUS_CODING OsKitaake01g334000
SBS Chr1 38446913 G-C Homo INTERGENIC
SBS Chr1 38446974 G-A Homo INTERGENIC
SBS Chr1 41691880 G-A Hetero INTERGENIC
SBS Chr1 41691881 A-T Hetero INTERGENIC
SBS Chr2 27583936 C-T Hetero INTERGENIC
SBS Chr2 33994056 C-T Hetero INTERGENIC
SBS Chr3 502283 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 1753937 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g025100
SBS Chr3 17396907 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g214400
SBS Chr3 33809846 A-G Hetero INTERGENIC
SBS Chr4 4003397 A-T Hetero INTERGENIC
SBS Chr4 32151447 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g255600
SBS Chr5 3497805 T-A Homo INTERGENIC
SBS Chr5 15025249 C-A Homo INTERGENIC
SBS Chr5 26369725 C-T Homo STOP_GAINED OsKitaake05g233000
SBS Chr6 18531758 G-T Homo INTERGENIC
SBS Chr6 22360591 T-C Hetero INTERGENIC
SBS Chr8 7093238 G-A Hetero INTERGENIC
SBS Chr8 17652737 C-G Hetero INTERGENIC
SBS Chr8 23262450 T-A Hetero INTERGENIC
SBS Chr8 23262451 C-A Hetero INTERGENIC
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 14459657 G-A Hetero INTERGENIC
SBS Chr10 6967685 C-A Homo INTERGENIC
SBS Chr11 9772325 T-C Hetero INTERGENIC
SBS Chr11 11796137 G-A Homo INTERGENIC
SBS Chr11 18323147 A-T Hetero INTRON
SBS Chr11 24337151 C-A Hetero INTERGENIC
SBS Chr11 27037456 G-A Hetero INTERGENIC
SBS Chr12 8834446 T-A Hetero INTRON
SBS Chr12 9860332 G-T Homo INTERGENIC
SBS Chr12 11827347 A-T Homo INTERGENIC
SBS Chr12 15216112 T-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1347834 1347844 10
Deletion Chr8 2434564 2434573 9
Deletion Chr8 4819109 4819129 20
Deletion Chr9 8490001 9033000 542999 25
Deletion Chr12 10648001 10671000 22999 2
Deletion Chr12 10679001 10872000 192999 11
Deletion Chr12 11212001 11348000 135999 OsKitaake12g102301
Deletion Chr6 15737609 15737610 1
Deletion Chr7 19489001 19620000 130999 12
Deletion Chr1 30127187 30127188 1 OsKitaake01g297000
Deletion Chr4 36463062 36463065 3
Deletion Chr1 40376492 40376503 11

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1229503 1229506 2
Insertion Chr6 29136797 29136800 2
Insertion Chr9 15121259 15121262 2
Insertion Chr2 33435361 33435366 4
Insertion Chr4 19161584 19161586 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 32209152 32458610
Inversion Chr1 32458623 32561140 OsKitaake01g330200

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1288066 Chr6 2904683
Translocation Chr8 1288124 Chr6 2891946 OsKitaake06g039200
Translocation Chr6 2891943 Chr2 7620683 OsKitaake06g039200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30806983	C-G	Homo	INTRON
SBS	Chr1	32859117	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g334000
SBS	Chr1	38446913	G-C	Homo	INTERGENIC
SBS	Chr1	38446974	G-A	Homo	INTERGENIC
SBS	Chr1	41691880	G-A	Hetero	INTERGENIC
SBS	Chr1	41691881	A-T	Hetero	INTERGENIC
SBS	Chr2	27583936	C-T	Hetero	INTERGENIC
SBS	Chr2	33994056	C-T	Hetero	INTERGENIC
SBS	Chr3	502283	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	1753937	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g025100
SBS	Chr3	17396907	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g214400
SBS	Chr3	33809846	A-G	Hetero	INTERGENIC
SBS	Chr4	4003397	A-T	Hetero	INTERGENIC
SBS	Chr4	32151447	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g255600
SBS	Chr5	3497805	T-A	Homo	INTERGENIC
SBS	Chr5	15025249	C-A	Homo	INTERGENIC
SBS	Chr5	26369725	C-T	Homo	STOP_GAINED	OsKitaake05g233000
SBS	Chr6	18531758	G-T	Homo	INTERGENIC
SBS	Chr6	22360591	T-C	Hetero	INTERGENIC
SBS	Chr8	7093238	G-A	Hetero	INTERGENIC
SBS	Chr8	17652737	C-G	Hetero	INTERGENIC
SBS	Chr8	23262450	T-A	Hetero	INTERGENIC
SBS	Chr8	23262451	C-A	Hetero	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14459657	G-A	Hetero	INTERGENIC
SBS	Chr10	6967685	C-A	Homo	INTERGENIC
SBS	Chr11	9772325	T-C	Hetero	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr11	18323147	A-T	Hetero	INTRON
SBS	Chr11	24337151	C-A	Hetero	INTERGENIC
SBS	Chr11	27037456	G-A	Hetero	INTERGENIC
SBS	Chr12	8834446	T-A	Hetero	INTRON
SBS	Chr12	9860332	G-T	Homo	INTERGENIC
SBS	Chr12	11827347	A-T	Homo	INTERGENIC
SBS	Chr12	15216112	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1347834	1347844	10
Deletion	Chr8	2434564	2434573	9
Deletion	Chr8	4819109	4819129	20
Deletion	Chr9	8490001	9033000	542999	25
Deletion	Chr12	10648001	10671000	22999	2
Deletion	Chr12	10679001	10872000	192999	11
Deletion	Chr12	11212001	11348000	135999	OsKitaake12g102301
Deletion	Chr6	15737609	15737610	1
Deletion	Chr7	19489001	19620000	130999	12
Deletion	Chr1	30127187	30127188	1	OsKitaake01g297000
Deletion	Chr4	36463062	36463065	3
Deletion	Chr1	40376492	40376503	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	32209152	32458610
Inversion	Chr1	32458623	32561140	OsKitaake01g330200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes