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Mutant Information

Mutant Name	FN2432 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2432 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9442851 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g121000
SBS Chr1 11148141 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g137000
SBS Chr1 13630640 A-T Hetero INTERGENIC
SBS Chr1 16113507 T-G Hetero INTERGENIC
SBS Chr1 29334003 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 30337034 G-A Homo INTERGENIC
SBS Chr1 32432891 T-A Homo INTRON
SBS Chr1 32432892 C-G Homo INTRON
SBS Chr2 5048037 G-A Hetero INTERGENIC
SBS Chr2 9324990 A-C Hetero INTERGENIC
SBS Chr2 11785396 A-G Hetero INTERGENIC
SBS Chr2 16590706 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g169600
SBS Chr2 23766973 G-A Hetero INTERGENIC
SBS Chr2 24176251 G-A Hetero INTERGENIC
SBS Chr2 25049128 C-T Hetero INTERGENIC
SBS Chr3 6196791 G-T Homo INTERGENIC
SBS Chr3 6933295 C-A Homo INTERGENIC
SBS Chr3 11364672 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 33217809 C-T Hetero INTERGENIC
SBS Chr4 15917705 C-T Hetero INTERGENIC
SBS Chr4 26773127 T-G Hetero INTERGENIC
SBS Chr4 28905624 A-G Hetero INTERGENIC
SBS Chr5 1183256 A-G Homo INTERGENIC
SBS Chr5 10081152 C-G Hetero INTERGENIC
SBS Chr5 12033432 C-T Homo INTERGENIC
SBS Chr6 29092718 T-A Hetero UTR_3_PRIME
SBS Chr6 30821658 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g291600
SBS Chr7 735138 T-A Hetero INTERGENIC
SBS Chr7 6844953 G-C Hetero INTERGENIC
SBS Chr7 9854754 C-T Hetero INTERGENIC
SBS Chr8 780272 C-T Hetero INTERGENIC
SBS Chr8 1950165 C-T Hetero INTERGENIC
SBS Chr8 9971121 C-A Hetero INTERGENIC
SBS Chr8 26854598 C-T Homo INTERGENIC
SBS Chr9 4301499 C-T Hetero INTERGENIC
SBS Chr9 4301503 C-T Hetero INTERGENIC
SBS Chr9 4301504 C-T Hetero INTERGENIC
SBS Chr9 8900463 T-A Hetero INTERGENIC
SBS Chr9 11385407 C-A Hetero INTERGENIC
SBS Chr9 22031155 G-A Hetero INTRON
SBS Chr10 1153469 G-T Homo INTERGENIC
SBS Chr10 1153470 A-T Homo INTERGENIC
SBS Chr11 4726271 C-A Hetero INTERGENIC
SBS Chr11 15053874 T-A Homo INTERGENIC
SBS Chr11 21153156 G-T Hetero INTERGENIC
SBS Chr12 4853775 T-C Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 409104 409106 2
Deletion Chr9 2229183 2229184 1
Deletion Chr8 2976620 2976626 6 OsKitaake08g032900
Deletion Chr1 3451994 3451995 1 OsKitaake01g045600
Deletion Chr11 10014998 10014999 1
Deletion Chr12 14223346 14223347 1
Deletion Chr9 18112278 18112281 3
Deletion Chr9 22043001 22295000 251999 52
Deletion Chr9 22297001 22551000 253999 49
Deletion Chr1 22375548 22375550 2
Deletion Chr6 26757233 26757235 2
Deletion Chr7 29361899 29361906 7
Deletion Chr1 31818436 31818437 1
Deletion Chr1 32437490 32437500 10
Deletion Chr1 36801713 36801717 4 OsKitaake01g391400
Deletion Chr1 42046000 42046001 1
Deletion Chr1 42347695 42347696 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 11797656 11797659 2
Insertion Chr5 18507813 18507816 2
Insertion Chr6 1100237 1100240 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 4299948 4371294
Inversion Chr9 4299956 4371299
Inversion Chr1 31603952 31846893
Inversion Chr1 31603961 31846900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9442851	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g121000
SBS	Chr1	11148141	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g137000
SBS	Chr1	13630640	A-T	Hetero	INTERGENIC
SBS	Chr1	16113507	T-G	Hetero	INTERGENIC
SBS	Chr1	29334003	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	30337034	G-A	Homo	INTERGENIC
SBS	Chr1	32432891	T-A	Homo	INTRON
SBS	Chr1	32432892	C-G	Homo	INTRON
SBS	Chr2	5048037	G-A	Hetero	INTERGENIC
SBS	Chr2	9324990	A-C	Hetero	INTERGENIC
SBS	Chr2	11785396	A-G	Hetero	INTERGENIC
SBS	Chr2	16590706	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g169600
SBS	Chr2	23766973	G-A	Hetero	INTERGENIC
SBS	Chr2	24176251	G-A	Hetero	INTERGENIC
SBS	Chr2	25049128	C-T	Hetero	INTERGENIC
SBS	Chr3	6196791	G-T	Homo	INTERGENIC
SBS	Chr3	6933295	C-A	Homo	INTERGENIC
SBS	Chr3	11364672	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	33217809	C-T	Hetero	INTERGENIC
SBS	Chr4	15917705	C-T	Hetero	INTERGENIC
SBS	Chr4	26773127	T-G	Hetero	INTERGENIC
SBS	Chr4	28905624	A-G	Hetero	INTERGENIC
SBS	Chr5	1183256	A-G	Homo	INTERGENIC
SBS	Chr5	10081152	C-G	Hetero	INTERGENIC
SBS	Chr5	12033432	C-T	Homo	INTERGENIC
SBS	Chr6	29092718	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	30821658	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g291600
SBS	Chr7	735138	T-A	Hetero	INTERGENIC
SBS	Chr7	6844953	G-C	Hetero	INTERGENIC
SBS	Chr7	9854754	C-T	Hetero	INTERGENIC
SBS	Chr8	780272	C-T	Hetero	INTERGENIC
SBS	Chr8	1950165	C-T	Hetero	INTERGENIC
SBS	Chr8	9971121	C-A	Hetero	INTERGENIC
SBS	Chr8	26854598	C-T	Homo	INTERGENIC
SBS	Chr9	4301499	C-T	Hetero	INTERGENIC
SBS	Chr9	4301503	C-T	Hetero	INTERGENIC
SBS	Chr9	4301504	C-T	Hetero	INTERGENIC
SBS	Chr9	8900463	T-A	Hetero	INTERGENIC
SBS	Chr9	11385407	C-A	Hetero	INTERGENIC
SBS	Chr9	22031155	G-A	Hetero	INTRON
SBS	Chr10	1153469	G-T	Homo	INTERGENIC
SBS	Chr10	1153470	A-T	Homo	INTERGENIC
SBS	Chr11	4726271	C-A	Hetero	INTERGENIC
SBS	Chr11	15053874	T-A	Homo	INTERGENIC
SBS	Chr11	21153156	G-T	Hetero	INTERGENIC
SBS	Chr12	4853775	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	409104	409106	2
Deletion	Chr9	2229183	2229184	1
Deletion	Chr8	2976620	2976626	6	OsKitaake08g032900
Deletion	Chr1	3451994	3451995	1	OsKitaake01g045600
Deletion	Chr11	10014998	10014999	1
Deletion	Chr12	14223346	14223347	1
Deletion	Chr9	18112278	18112281	3
Deletion	Chr9	22043001	22295000	251999	52
Deletion	Chr9	22297001	22551000	253999	49
Deletion	Chr1	22375548	22375550	2
Deletion	Chr6	26757233	26757235	2
Deletion	Chr7	29361899	29361906	7
Deletion	Chr1	31818436	31818437	1
Deletion	Chr1	32437490	32437500	10
Deletion	Chr1	36801713	36801717	4	OsKitaake01g391400
Deletion	Chr1	42046000	42046001	1
Deletion	Chr1	42347695	42347696	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4299948	4371294
Inversion	Chr9	4299956	4371299
Inversion	Chr1	31603952	31846893
Inversion	Chr1	31603961	31846900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes