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Mutant Information

Mutant Name	FN2433 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2433 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 432544 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g006100
SBS Chr1 6231062 T-C Homo INTRON
SBS Chr1 18886301 C-T Hetero INTERGENIC
SBS Chr2 1941786 G-T Hetero INTRON
SBS Chr2 7967925 C-T Hetero INTERGENIC
SBS Chr2 11550207 C-T Hetero INTERGENIC
SBS Chr2 26486215 T-C Hetero INTERGENIC
SBS Chr2 27022244 T-G Hetero INTERGENIC
SBS Chr2 28807406 G-A Hetero INTERGENIC
SBS Chr2 32742712 G-A Homo INTRON
SBS Chr3 18248179 T-C Homo INTERGENIC
SBS Chr3 20582484 T-C Homo INTERGENIC
SBS Chr3 20582485 C-A Homo INTERGENIC
SBS Chr3 25788933 G-C Homo INTRON
SBS Chr4 14372682 G-A Hetero INTERGENIC
SBS Chr4 25229567 G-T Hetero INTERGENIC
SBS Chr4 34496446 C-A Homo INTERGENIC
SBS Chr5 3776315 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g045200
SBS Chr5 4436672 T-A Hetero INTERGENIC
SBS Chr5 4436708 A-G Hetero INTERGENIC
SBS Chr5 4501719 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g052200
SBS Chr5 6981914 G-T Hetero STOP_GAINED OsKitaake05g070100
SBS Chr5 23533794 T-C Hetero INTERGENIC
SBS Chr5 24625247 C-A Hetero INTERGENIC
SBS Chr5 29203496 G-A Hetero INTRON
SBS Chr7 684825 A-T Hetero INTERGENIC
SBS Chr7 10816415 G-T Hetero INTERGENIC
SBS Chr8 14085984 A-G Hetero INTERGENIC
SBS Chr9 767108 G-A Hetero INTERGENIC
SBS Chr11 1166507 T-A Hetero INTERGENIC
SBS Chr11 1278398 C-A Hetero INTRON
SBS Chr11 1278400 C-A Hetero INTRON
SBS Chr11 15944520 C-A Hetero INTRON
SBS Chr12 6785880 G-A Hetero INTERGENIC
SBS Chr12 7961211 C-T Hetero INTERGENIC
SBS Chr12 21293619 G-C Hetero INTERGENIC
SBS Chr12 25850379 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 732999 733005 6
Deletion Chr11 1761001 1769000 7999 4
Deletion Chr3 6065447 6065455 8
Deletion Chr5 7337562 7337571 9
Deletion Chr6 8548660 8548661 1
Deletion Chr8 17140668 17140669 1
Deletion Chr12 20696947 20696948 1 OsKitaake12g161200
Deletion Chr5 22494095 22494096 1
Deletion Chr2 22987189 22987192 3
Deletion Chr10 23026323 23026327 4
Deletion Chr11 23091262 23091269 7
Deletion Chr8 24251394 24251395 1
Deletion Chr5 24825628 24825630 2
Deletion Chr5 28306689 28306697 8
Deletion Chr5 28464835 28464836 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16209001 16209004 2
Insertion Chr7 21777054 21777058 3
Insertion Chr8 20109374 20109377 2
Insertion Chr9 12959723 12959726 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 29015853 29177980 OsKitaake05g274000
Inversion Chr5 29015859 29177978 OsKitaake05g274000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 21714020 Chr2 13081072
Translocation Chr4 21714031 Chr2 13080786

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	432544	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g006100
SBS	Chr1	6231062	T-C	Homo	INTRON
SBS	Chr1	18886301	C-T	Hetero	INTERGENIC
SBS	Chr2	1941786	G-T	Hetero	INTRON
SBS	Chr2	7967925	C-T	Hetero	INTERGENIC
SBS	Chr2	11550207	C-T	Hetero	INTERGENIC
SBS	Chr2	26486215	T-C	Hetero	INTERGENIC
SBS	Chr2	27022244	T-G	Hetero	INTERGENIC
SBS	Chr2	28807406	G-A	Hetero	INTERGENIC
SBS	Chr2	32742712	G-A	Homo	INTRON
SBS	Chr3	18248179	T-C	Homo	INTERGENIC
SBS	Chr3	20582484	T-C	Homo	INTERGENIC
SBS	Chr3	20582485	C-A	Homo	INTERGENIC
SBS	Chr3	25788933	G-C	Homo	INTRON
SBS	Chr4	14372682	G-A	Hetero	INTERGENIC
SBS	Chr4	25229567	G-T	Hetero	INTERGENIC
SBS	Chr4	34496446	C-A	Homo	INTERGENIC
SBS	Chr5	3776315	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g045200
SBS	Chr5	4436672	T-A	Hetero	INTERGENIC
SBS	Chr5	4436708	A-G	Hetero	INTERGENIC
SBS	Chr5	4501719	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g052200
SBS	Chr5	6981914	G-T	Hetero	STOP_GAINED	OsKitaake05g070100
SBS	Chr5	23533794	T-C	Hetero	INTERGENIC
SBS	Chr5	24625247	C-A	Hetero	INTERGENIC
SBS	Chr5	29203496	G-A	Hetero	INTRON
SBS	Chr7	684825	A-T	Hetero	INTERGENIC
SBS	Chr7	10816415	G-T	Hetero	INTERGENIC
SBS	Chr8	14085984	A-G	Hetero	INTERGENIC
SBS	Chr9	767108	G-A	Hetero	INTERGENIC
SBS	Chr11	1166507	T-A	Hetero	INTERGENIC
SBS	Chr11	1278398	C-A	Hetero	INTRON
SBS	Chr11	1278400	C-A	Hetero	INTRON
SBS	Chr11	15944520	C-A	Hetero	INTRON
SBS	Chr12	6785880	G-A	Hetero	INTERGENIC
SBS	Chr12	7961211	C-T	Hetero	INTERGENIC
SBS	Chr12	21293619	G-C	Hetero	INTERGENIC
SBS	Chr12	25850379	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	732999	733005	6
Deletion	Chr11	1761001	1769000	7999	4
Deletion	Chr3	6065447	6065455	8
Deletion	Chr5	7337562	7337571	9
Deletion	Chr6	8548660	8548661	1
Deletion	Chr8	17140668	17140669	1
Deletion	Chr12	20696947	20696948	1	OsKitaake12g161200
Deletion	Chr5	22494095	22494096	1
Deletion	Chr2	22987189	22987192	3
Deletion	Chr10	23026323	23026327	4
Deletion	Chr11	23091262	23091269	7
Deletion	Chr8	24251394	24251395	1
Deletion	Chr5	24825628	24825630	2
Deletion	Chr5	28306689	28306697	8
Deletion	Chr5	28464835	28464836	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	29015853	29177980	OsKitaake05g274000
Inversion	Chr5	29015859	29177978	OsKitaake05g274000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes