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Mutant Information

Mutant Name	FN2434 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2434 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19248607 G-A Hetero INTERGENIC
SBS Chr1 21134513 C-G Homo INTERGENIC
SBS Chr1 22699578 T-C Hetero INTERGENIC
SBS Chr1 28162803 A-G Homo INTERGENIC
SBS Chr2 18835626 A-T Homo INTERGENIC
SBS Chr2 19879137 G-T Homo SPLICE_SITE_REGION
SBS Chr2 19879138 A-T Homo SPLICE_SITE_REGION
SBS Chr2 19879141 C-T Homo SPLICE_SITE_REGION
SBS Chr3 11560803 G-T Homo INTERGENIC
SBS Chr3 16907872 C-T Homo INTRON
SBS Chr3 16907874 A-T Homo INTRON
SBS Chr4 1500747 C-T Hetero INTERGENIC
SBS Chr4 1684103 C-T Hetero INTERGENIC
SBS Chr4 7996948 C-T Hetero INTERGENIC
SBS Chr4 12027254 C-T Hetero INTERGENIC
SBS Chr4 28687386 C-T Hetero INTERGENIC
SBS Chr5 39389 T-G Homo SYNONYMOUS_CODING
SBS Chr5 7029809 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g070600
SBS Chr5 11163931 G-A Hetero INTERGENIC
SBS Chr5 28221676 G-T Hetero INTERGENIC
SBS Chr6 9587811 C-T Hetero INTERGENIC
SBS Chr6 11772440 G-A Hetero INTERGENIC
SBS Chr6 17850968 T-A Hetero INTRON
SBS Chr6 21179171 A-T Hetero INTRON
SBS Chr6 22976565 A-G Hetero INTERGENIC
SBS Chr6 23216737 T-C Hetero INTERGENIC
SBS Chr6 30736394 A-T Hetero INTERGENIC
SBS Chr7 2445495 A-C Hetero SPLICE_SITE_REGION
SBS Chr7 6013090 G-A Hetero INTERGENIC
SBS Chr7 24712439 G-A Homo INTERGENIC
SBS Chr8 4617441 A-G Homo INTRON
SBS Chr8 24106885 A-G Homo INTERGENIC
SBS Chr8 25918309 G-A Hetero INTERGENIC
SBS Chr10 1014892 T-A Hetero INTRON
SBS Chr10 1014893 G-T Hetero INTRON
SBS Chr11 23031863 G-A Homo INTRON
SBS Chr12 13902592 C-T Hetero INTERGENIC
SBS Chr12 17563587 G-A Homo INTRON

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 12699550 12699558 8
Deletion Chr4 16055001 16085000 29999 3
Deletion Chr5 21015197 21015199 2
Deletion Chr5 22613403 22613406 3
Deletion Chr12 26337639 26337641 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21392013 21392018 4
Insertion Chr9 16896304 16896307 2
Insertion Chr3 4089967 4089969 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 25751210 Chr4 30288980
Translocation Chr7 25751221 Chr4 30285266

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19248607	G-A	Hetero	INTERGENIC
SBS	Chr1	21134513	C-G	Homo	INTERGENIC
SBS	Chr1	22699578	T-C	Hetero	INTERGENIC
SBS	Chr1	28162803	A-G	Homo	INTERGENIC
SBS	Chr2	18835626	A-T	Homo	INTERGENIC
SBS	Chr2	19879137	G-T	Homo	SPLICE_SITE_REGION
SBS	Chr2	19879138	A-T	Homo	SPLICE_SITE_REGION
SBS	Chr2	19879141	C-T	Homo	SPLICE_SITE_REGION
SBS	Chr3	11560803	G-T	Homo	INTERGENIC
SBS	Chr3	16907872	C-T	Homo	INTRON
SBS	Chr3	16907874	A-T	Homo	INTRON
SBS	Chr4	1500747	C-T	Hetero	INTERGENIC
SBS	Chr4	1684103	C-T	Hetero	INTERGENIC
SBS	Chr4	7996948	C-T	Hetero	INTERGENIC
SBS	Chr4	12027254	C-T	Hetero	INTERGENIC
SBS	Chr4	28687386	C-T	Hetero	INTERGENIC
SBS	Chr5	39389	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr5	7029809	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g070600
SBS	Chr5	11163931	G-A	Hetero	INTERGENIC
SBS	Chr5	28221676	G-T	Hetero	INTERGENIC
SBS	Chr6	9587811	C-T	Hetero	INTERGENIC
SBS	Chr6	11772440	G-A	Hetero	INTERGENIC
SBS	Chr6	17850968	T-A	Hetero	INTRON
SBS	Chr6	21179171	A-T	Hetero	INTRON
SBS	Chr6	22976565	A-G	Hetero	INTERGENIC
SBS	Chr6	23216737	T-C	Hetero	INTERGENIC
SBS	Chr6	30736394	A-T	Hetero	INTERGENIC
SBS	Chr7	2445495	A-C	Hetero	SPLICE_SITE_REGION
SBS	Chr7	6013090	G-A	Hetero	INTERGENIC
SBS	Chr7	24712439	G-A	Homo	INTERGENIC
SBS	Chr8	4617441	A-G	Homo	INTRON
SBS	Chr8	24106885	A-G	Homo	INTERGENIC
SBS	Chr8	25918309	G-A	Hetero	INTERGENIC
SBS	Chr10	1014892	T-A	Hetero	INTRON
SBS	Chr10	1014893	G-T	Hetero	INTRON
SBS	Chr11	23031863	G-A	Homo	INTRON
SBS	Chr12	13902592	C-T	Hetero	INTERGENIC
SBS	Chr12	17563587	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	12699550	12699558	8
Deletion	Chr4	16055001	16085000	29999	3
Deletion	Chr5	21015197	21015199	2
Deletion	Chr5	22613403	22613406	3
Deletion	Chr12	26337639	26337641	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	25751210	Chr4	30288980
Translocation	Chr7	25751221	Chr4	30285266

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes