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Mutant Information

Mutant Name	FN2435 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2435 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3062094 A-G Hetero INTRON
SBS Chr1 4259190 T-G Hetero INTRON
SBS Chr1 4408873 A-G Hetero INTERGENIC
SBS Chr1 13024842 G-C Homo INTERGENIC
SBS Chr1 25081428 C-T Hetero INTERGENIC
SBS Chr1 25282917 G-A Hetero INTRON
SBS Chr1 26189900 T-G Hetero INTRON
SBS Chr1 40458335 G-A Hetero INTERGENIC
SBS Chr1 40477311 G-A Hetero INTERGENIC
SBS Chr1 40477312 C-T Hetero INTERGENIC
SBS Chr1 42100006 A-T Hetero UTR_3_PRIME
SBS Chr2 13424111 G-A Homo INTERGENIC
SBS Chr2 20936621 C-G Hetero INTERGENIC
SBS Chr2 23757299 C-T Hetero INTERGENIC
SBS Chr2 30279680 G-A Hetero INTERGENIC
SBS Chr2 31094491 G-A Hetero INTRON
SBS Chr3 6521159 T-A Homo INTERGENIC
SBS Chr3 8649893 C-T Hetero INTERGENIC
SBS Chr3 15443560 G-A Hetero INTERGENIC
SBS Chr3 24108668 C-T Hetero UTR_5_PRIME
SBS Chr4 16020135 C-T Hetero INTERGENIC
SBS Chr4 19084460 G-C Hetero INTERGENIC
SBS Chr4 21159009 T-C Hetero INTERGENIC
SBS Chr4 29786862 T-A Hetero INTRON
SBS Chr5 13578055 C-A Homo INTERGENIC
SBS Chr5 28678798 G-T Homo INTERGENIC
SBS Chr6 919723 A-C Hetero INTERGENIC
SBS Chr6 1000339 T-A Hetero INTERGENIC
SBS Chr6 4162013 A-G Hetero INTRON
SBS Chr6 17003835 T-C Homo INTERGENIC
SBS Chr6 27887439 A-G Hetero INTERGENIC
SBS Chr6 27887440 T-C Hetero INTERGENIC
SBS Chr6 28664487 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g263700
SBS Chr7 12819612 C-T Hetero INTRON
SBS Chr7 12974216 C-T Hetero INTERGENIC
SBS Chr7 21486408 A-C Homo INTERGENIC
SBS Chr8 4123420 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g046700
SBS Chr8 8010919 T-C Hetero INTERGENIC
SBS Chr8 17476866 C-T Hetero INTERGENIC
SBS Chr8 22661610 G-A Hetero INTERGENIC
SBS Chr9 17283778 G-A Hetero INTERGENIC
SBS Chr9 17614268 C-A Hetero INTRON
SBS Chr11 3908824 G-A Homo INTERGENIC
SBS Chr11 4850594 T-G Homo INTERGENIC
SBS Chr11 23125778 C-A Hetero INTERGENIC
SBS Chr12 13505728 A-C Hetero INTERGENIC
SBS Chr12 13505733 G-A Hetero INTERGENIC
SBS Chr12 20132642 C-T Hetero INTERGENIC
SBS Chr12 22673246 G-T Hetero INTERGENIC
SBS Chr12 24674758 A-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 357062 357067 5
Deletion Chr8 2370617 2370619 2
Deletion Chr4 4253119 4253120 1
Deletion Chr9 4436799 4436800 1
Deletion Chr9 4503839 4503855 16
Deletion Chr7 4836398 4836424 26
Deletion Chr7 13205936 13205940 4
Deletion Chr2 15761614 15761616 2
Deletion Chr10 15959001 16009000 49999 7
Deletion Chr12 19259001 19271000 11999 2
Deletion Chr3 21195185 21195192 7
Deletion Chr5 28037398 28037399 1
Deletion Chr5 28680980 28680982 2
Deletion Chr6 30724209 30724218 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 22216262 22216264 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 14796001 15066287
Inversion Chr12 14796004 15066301
Inversion Chr5 29480373 29853338 OsKitaake05g285800

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 13755577 Chr6 15061744

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3062094	A-G	Hetero	INTRON
SBS	Chr1	4259190	T-G	Hetero	INTRON
SBS	Chr1	4408873	A-G	Hetero	INTERGENIC
SBS	Chr1	13024842	G-C	Homo	INTERGENIC
SBS	Chr1	25081428	C-T	Hetero	INTERGENIC
SBS	Chr1	25282917	G-A	Hetero	INTRON
SBS	Chr1	26189900	T-G	Hetero	INTRON
SBS	Chr1	40458335	G-A	Hetero	INTERGENIC
SBS	Chr1	40477311	G-A	Hetero	INTERGENIC
SBS	Chr1	40477312	C-T	Hetero	INTERGENIC
SBS	Chr1	42100006	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	13424111	G-A	Homo	INTERGENIC
SBS	Chr2	20936621	C-G	Hetero	INTERGENIC
SBS	Chr2	23757299	C-T	Hetero	INTERGENIC
SBS	Chr2	30279680	G-A	Hetero	INTERGENIC
SBS	Chr2	31094491	G-A	Hetero	INTRON
SBS	Chr3	6521159	T-A	Homo	INTERGENIC
SBS	Chr3	8649893	C-T	Hetero	INTERGENIC
SBS	Chr3	15443560	G-A	Hetero	INTERGENIC
SBS	Chr3	24108668	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	16020135	C-T	Hetero	INTERGENIC
SBS	Chr4	19084460	G-C	Hetero	INTERGENIC
SBS	Chr4	21159009	T-C	Hetero	INTERGENIC
SBS	Chr4	29786862	T-A	Hetero	INTRON
SBS	Chr5	13578055	C-A	Homo	INTERGENIC
SBS	Chr5	28678798	G-T	Homo	INTERGENIC
SBS	Chr6	919723	A-C	Hetero	INTERGENIC
SBS	Chr6	1000339	T-A	Hetero	INTERGENIC
SBS	Chr6	4162013	A-G	Hetero	INTRON
SBS	Chr6	17003835	T-C	Homo	INTERGENIC
SBS	Chr6	27887439	A-G	Hetero	INTERGENIC
SBS	Chr6	27887440	T-C	Hetero	INTERGENIC
SBS	Chr6	28664487	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g263700
SBS	Chr7	12819612	C-T	Hetero	INTRON
SBS	Chr7	12974216	C-T	Hetero	INTERGENIC
SBS	Chr7	21486408	A-C	Homo	INTERGENIC
SBS	Chr8	4123420	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g046700
SBS	Chr8	8010919	T-C	Hetero	INTERGENIC
SBS	Chr8	17476866	C-T	Hetero	INTERGENIC
SBS	Chr8	22661610	G-A	Hetero	INTERGENIC
SBS	Chr9	17283778	G-A	Hetero	INTERGENIC
SBS	Chr9	17614268	C-A	Hetero	INTRON
SBS	Chr11	3908824	G-A	Homo	INTERGENIC
SBS	Chr11	4850594	T-G	Homo	INTERGENIC
SBS	Chr11	23125778	C-A	Hetero	INTERGENIC
SBS	Chr12	13505728	A-C	Hetero	INTERGENIC
SBS	Chr12	13505733	G-A	Hetero	INTERGENIC
SBS	Chr12	20132642	C-T	Hetero	INTERGENIC
SBS	Chr12	22673246	G-T	Hetero	INTERGENIC
SBS	Chr12	24674758	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	357062	357067	5
Deletion	Chr8	2370617	2370619	2
Deletion	Chr4	4253119	4253120	1
Deletion	Chr9	4436799	4436800	1
Deletion	Chr9	4503839	4503855	16
Deletion	Chr7	4836398	4836424	26
Deletion	Chr7	13205936	13205940	4
Deletion	Chr2	15761614	15761616	2
Deletion	Chr10	15959001	16009000	49999	7
Deletion	Chr12	19259001	19271000	11999	2
Deletion	Chr3	21195185	21195192	7
Deletion	Chr5	28037398	28037399	1
Deletion	Chr5	28680980	28680982	2
Deletion	Chr6	30724209	30724218	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	14796001	15066287
Inversion	Chr12	14796004	15066301
Inversion	Chr5	29480373	29853338	OsKitaake05g285800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes