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Mutant Information

Mutant Name	FN2436 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2436 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13089368 G-C Hetero SYNONYMOUS_CODING
SBS Chr1 16107406 C-G Homo INTERGENIC
SBS Chr1 29826952 C-T Homo INTRON
SBS Chr1 33187639 T-G Hetero INTERGENIC
SBS Chr1 34077710 T-C Hetero INTRON
SBS Chr2 9147272 G-T Hetero INTRON
SBS Chr3 1427494 C-T Homo INTERGENIC
SBS Chr3 18327892 T-A Hetero INTERGENIC
SBS Chr3 33529961 G-C Hetero INTRON
SBS Chr4 3447866 A-G Hetero INTERGENIC
SBS Chr4 4467148 A-T Hetero INTERGENIC
SBS Chr4 13112432 A-T Hetero INTERGENIC
SBS Chr5 15861891 G-C Hetero INTERGENIC
SBS Chr5 17293338 C-G Hetero INTERGENIC
SBS Chr5 22435058 G-A Homo INTERGENIC
SBS Chr5 24536246 C-T Hetero INTERGENIC
SBS Chr6 9832270 A-T Hetero INTERGENIC
SBS Chr6 13823332 C-T Hetero INTERGENIC
SBS Chr6 17600797 G-A Homo INTERGENIC
SBS Chr6 23330673 A-G Homo INTERGENIC
SBS Chr7 1697374 C-T Homo INTERGENIC
SBS Chr7 5046620 C-A Homo INTERGENIC
SBS Chr7 27875766 C-A Hetero INTERGENIC
SBS Chr8 5084942 G-T Homo INTERGENIC
SBS Chr8 15122087 A-T Homo INTRON
SBS Chr8 24306321 C-T Hetero INTERGENIC
SBS Chr9 5714241 T-G Hetero INTERGENIC
SBS Chr9 12258193 A-T Hetero INTERGENIC
SBS Chr10 3520386 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 3606096 G-T Hetero INTERGENIC
SBS Chr10 4308936 T-G Hetero INTERGENIC
SBS Chr10 17014476 A-C Hetero INTERGENIC
SBS Chr10 22446557 A-G Hetero INTERGENIC
SBS Chr11 5930359 C-T Homo INTRON
SBS Chr11 10903500 C-G Hetero SYNONYMOUS_CODING
SBS Chr11 12007102 A-T Homo INTRON
SBS Chr11 14245495 T-A Homo INTERGENIC
SBS Chr11 14547641 C-G Homo INTRON
SBS Chr11 17563131 G-A Hetero INTERGENIC
SBS Chr11 21303633 G-A Hetero INTERGENIC
SBS Chr11 26191689 G-A Homo INTERGENIC
SBS Chr12 4295090 C-A Hetero UTR_3_PRIME
SBS Chr12 4295091 T-A Hetero UTR_3_PRIME

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2783007 2783008 1
Deletion Chr6 3608023 3608031 8
Deletion Chr8 4927654 4927655 1
Deletion Chr8 5098257 5098264 7
Deletion Chr7 5416777 5416789 12
Deletion Chr12 9125840 9125844 4
Deletion Chr6 9570187 9570199 12
Deletion Chr8 9835866 9835867 1
Deletion Chr3 10358593 10358594 1 OsKitaake03g141400
Deletion Chr5 10689409 10689414 5
Deletion Chr8 13573256 13573258 2
Deletion Chr12 13938865 13938866 1
Deletion Chr11 15790262 15790278 16
Deletion Chr8 26918683 26918689 6
Deletion Chr11 27388343 27388344 1
Deletion Chr8 27656106 27656107 1
Deletion Chr1 34888894 34888897 3 OsKitaake01g367600

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14959524 14959527 2
Insertion Chr1 27980418 27980421 2
Insertion Chr4 30445616 30445628 11
Insertion Chr7 5959515 5959518 2
Insertion Chr10 1664078 1664082 3
Insertion Chr5 30236466 30236474 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13089368	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	16107406	C-G	Homo	INTERGENIC
SBS	Chr1	29826952	C-T	Homo	INTRON
SBS	Chr1	33187639	T-G	Hetero	INTERGENIC
SBS	Chr1	34077710	T-C	Hetero	INTRON
SBS	Chr2	9147272	G-T	Hetero	INTRON
SBS	Chr3	1427494	C-T	Homo	INTERGENIC
SBS	Chr3	18327892	T-A	Hetero	INTERGENIC
SBS	Chr3	33529961	G-C	Hetero	INTRON
SBS	Chr4	3447866	A-G	Hetero	INTERGENIC
SBS	Chr4	4467148	A-T	Hetero	INTERGENIC
SBS	Chr4	13112432	A-T	Hetero	INTERGENIC
SBS	Chr5	15861891	G-C	Hetero	INTERGENIC
SBS	Chr5	17293338	C-G	Hetero	INTERGENIC
SBS	Chr5	22435058	G-A	Homo	INTERGENIC
SBS	Chr5	24536246	C-T	Hetero	INTERGENIC
SBS	Chr6	9832270	A-T	Hetero	INTERGENIC
SBS	Chr6	13823332	C-T	Hetero	INTERGENIC
SBS	Chr6	17600797	G-A	Homo	INTERGENIC
SBS	Chr6	23330673	A-G	Homo	INTERGENIC
SBS	Chr7	1697374	C-T	Homo	INTERGENIC
SBS	Chr7	5046620	C-A	Homo	INTERGENIC
SBS	Chr7	27875766	C-A	Hetero	INTERGENIC
SBS	Chr8	5084942	G-T	Homo	INTERGENIC
SBS	Chr8	15122087	A-T	Homo	INTRON
SBS	Chr8	24306321	C-T	Hetero	INTERGENIC
SBS	Chr9	5714241	T-G	Hetero	INTERGENIC
SBS	Chr9	12258193	A-T	Hetero	INTERGENIC
SBS	Chr10	3520386	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	3606096	G-T	Hetero	INTERGENIC
SBS	Chr10	4308936	T-G	Hetero	INTERGENIC
SBS	Chr10	17014476	A-C	Hetero	INTERGENIC
SBS	Chr10	22446557	A-G	Hetero	INTERGENIC
SBS	Chr11	5930359	C-T	Homo	INTRON
SBS	Chr11	10903500	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	12007102	A-T	Homo	INTRON
SBS	Chr11	14245495	T-A	Homo	INTERGENIC
SBS	Chr11	14547641	C-G	Homo	INTRON
SBS	Chr11	17563131	G-A	Hetero	INTERGENIC
SBS	Chr11	21303633	G-A	Hetero	INTERGENIC
SBS	Chr11	26191689	G-A	Homo	INTERGENIC
SBS	Chr12	4295090	C-A	Hetero	UTR_3_PRIME
SBS	Chr12	4295091	T-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2783007	2783008	1
Deletion	Chr6	3608023	3608031	8
Deletion	Chr8	4927654	4927655	1
Deletion	Chr8	5098257	5098264	7
Deletion	Chr7	5416777	5416789	12
Deletion	Chr12	9125840	9125844	4
Deletion	Chr6	9570187	9570199	12
Deletion	Chr8	9835866	9835867	1
Deletion	Chr3	10358593	10358594	1	OsKitaake03g141400
Deletion	Chr5	10689409	10689414	5
Deletion	Chr8	13573256	13573258	2
Deletion	Chr12	13938865	13938866	1
Deletion	Chr11	15790262	15790278	16
Deletion	Chr8	26918683	26918689	6
Deletion	Chr11	27388343	27388344	1
Deletion	Chr8	27656106	27656107	1
Deletion	Chr1	34888894	34888897	3	OsKitaake01g367600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes