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Mutant Information

Mutant Name	FN2437 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2437 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1035615 G-A Hetero INTERGENIC
SBS Chr1 14510809 A-T Hetero INTERGENIC
SBS Chr1 14520668 G-A Hetero INTERGENIC
SBS Chr1 14633433 A-G Homo INTERGENIC
SBS Chr1 18881174 C-G Homo INTERGENIC
SBS Chr1 23046697 G-A Hetero INTERGENIC
SBS Chr1 33396065 A-G Homo INTERGENIC
SBS Chr2 7886563 T-C Hetero INTERGENIC
SBS Chr2 7925228 A-T Hetero INTERGENIC
SBS Chr2 24269137 C-A Hetero INTRON
SBS Chr2 24905766 G-A Hetero INTERGENIC
SBS Chr2 30883864 T-G Hetero INTERGENIC
SBS Chr2 35456640 G-A Hetero INTERGENIC
SBS Chr3 17265935 T-C Homo INTERGENIC
SBS Chr3 17714716 G-C Homo INTERGENIC
SBS Chr4 36417632 G-A Hetero INTERGENIC
SBS Chr5 5060086 G-A Homo INTERGENIC
SBS Chr5 8725082 G-T Homo INTERGENIC
SBS Chr5 15302648 G-A Hetero INTERGENIC
SBS Chr6 16965949 T-A Hetero INTRON
SBS Chr6 23956097 G-A Homo INTERGENIC
SBS Chr6 25713682 C-A Hetero INTERGENIC
SBS Chr6 30929312 T-G Hetero UTR_3_PRIME
SBS Chr6 30992231 G-A Hetero INTERGENIC
SBS Chr7 3017621 A-T Hetero INTERGENIC
SBS Chr7 11108516 T-C Hetero INTERGENIC
SBS Chr8 1348769 C-G Homo INTERGENIC
SBS Chr8 18283782 C-T Homo INTERGENIC
SBS Chr9 9610233 G-A Homo INTERGENIC
SBS Chr9 22407436 G-A Hetero INTERGENIC
SBS Chr10 2284491 G-T Hetero INTERGENIC
SBS Chr10 2483300 G-T Hetero INTERGENIC
SBS Chr10 2571164 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g020300
SBS Chr10 2637841 G-A Hetero INTERGENIC
SBS Chr11 13021130 G-T Hetero INTERGENIC
SBS Chr11 18677716 A-G Homo SPLICE_SITE_REGION
SBS Chr11 19128691 G-A Homo INTERGENIC
SBS Chr12 6602118 T-C Hetero INTERGENIC
SBS Chr12 12521045 G-A Hetero INTERGENIC
SBS Chr12 13882612 G-A Hetero INTERGENIC
SBS Chr12 18675195 G-A Hetero INTRON

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 233360 233376 16
Deletion Chr10 548399 548410 11 OsKitaake10g004100
Deletion Chr2 1231601 1231608 7
Deletion Chr9 1599916 1599929 13
Deletion Chr2 4822498 4822506 8
Deletion Chr12 6365366 6365369 3
Deletion Chr7 6865203 6865209 6
Deletion Chr11 8127788 8127792 4
Deletion Chr12 11144196 11144199 3
Deletion Chr2 11253293 11253294 1
Deletion Chr6 13888080 13888081 1
Deletion Chr11 14534909 14534910 1
Deletion Chr12 14912039 14912040 1
Deletion Chr2 17772710 17772732 22
Deletion Chr12 19751353 19751376 23
Deletion Chr10 20081194 20081206 12
Deletion Chr3 21855651 21855652 1
Deletion Chr3 24273318 24273319 1
Deletion Chr3 30025416 30025420 4
Deletion Chr3 30930153 30930154 1
Deletion Chr2 34844133 34844139 6
Deletion Chr4 36269108 36269109 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25232891 25232895 3
Insertion Chr3 33018042 33018045 2
Insertion Chr4 11916458 11916464 5
Insertion Chr4 22073080 22073084 3
Insertion Chr5 5552618 5552621 2
Insertion Chr6 26810422 26810425 2
Insertion Chr6 29378940 29378943 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 13028832 13879386
Inversion Chr8 13032053 13879396

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1035615	G-A	Hetero	INTERGENIC
SBS	Chr1	14510809	A-T	Hetero	INTERGENIC
SBS	Chr1	14520668	G-A	Hetero	INTERGENIC
SBS	Chr1	14633433	A-G	Homo	INTERGENIC
SBS	Chr1	18881174	C-G	Homo	INTERGENIC
SBS	Chr1	23046697	G-A	Hetero	INTERGENIC
SBS	Chr1	33396065	A-G	Homo	INTERGENIC
SBS	Chr2	7886563	T-C	Hetero	INTERGENIC
SBS	Chr2	7925228	A-T	Hetero	INTERGENIC
SBS	Chr2	24269137	C-A	Hetero	INTRON
SBS	Chr2	24905766	G-A	Hetero	INTERGENIC
SBS	Chr2	30883864	T-G	Hetero	INTERGENIC
SBS	Chr2	35456640	G-A	Hetero	INTERGENIC
SBS	Chr3	17265935	T-C	Homo	INTERGENIC
SBS	Chr3	17714716	G-C	Homo	INTERGENIC
SBS	Chr4	36417632	G-A	Hetero	INTERGENIC
SBS	Chr5	5060086	G-A	Homo	INTERGENIC
SBS	Chr5	8725082	G-T	Homo	INTERGENIC
SBS	Chr5	15302648	G-A	Hetero	INTERGENIC
SBS	Chr6	16965949	T-A	Hetero	INTRON
SBS	Chr6	23956097	G-A	Homo	INTERGENIC
SBS	Chr6	25713682	C-A	Hetero	INTERGENIC
SBS	Chr6	30929312	T-G	Hetero	UTR_3_PRIME
SBS	Chr6	30992231	G-A	Hetero	INTERGENIC
SBS	Chr7	3017621	A-T	Hetero	INTERGENIC
SBS	Chr7	11108516	T-C	Hetero	INTERGENIC
SBS	Chr8	1348769	C-G	Homo	INTERGENIC
SBS	Chr8	18283782	C-T	Homo	INTERGENIC
SBS	Chr9	9610233	G-A	Homo	INTERGENIC
SBS	Chr9	22407436	G-A	Hetero	INTERGENIC
SBS	Chr10	2284491	G-T	Hetero	INTERGENIC
SBS	Chr10	2483300	G-T	Hetero	INTERGENIC
SBS	Chr10	2571164	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g020300
SBS	Chr10	2637841	G-A	Hetero	INTERGENIC
SBS	Chr11	13021130	G-T	Hetero	INTERGENIC
SBS	Chr11	18677716	A-G	Homo	SPLICE_SITE_REGION
SBS	Chr11	19128691	G-A	Homo	INTERGENIC
SBS	Chr12	6602118	T-C	Hetero	INTERGENIC
SBS	Chr12	12521045	G-A	Hetero	INTERGENIC
SBS	Chr12	13882612	G-A	Hetero	INTERGENIC
SBS	Chr12	18675195	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	233360	233376	16
Deletion	Chr10	548399	548410	11	OsKitaake10g004100
Deletion	Chr2	1231601	1231608	7
Deletion	Chr9	1599916	1599929	13
Deletion	Chr2	4822498	4822506	8
Deletion	Chr12	6365366	6365369	3
Deletion	Chr7	6865203	6865209	6
Deletion	Chr11	8127788	8127792	4
Deletion	Chr12	11144196	11144199	3
Deletion	Chr2	11253293	11253294	1
Deletion	Chr6	13888080	13888081	1
Deletion	Chr11	14534909	14534910	1
Deletion	Chr12	14912039	14912040	1
Deletion	Chr2	17772710	17772732	22
Deletion	Chr12	19751353	19751376	23
Deletion	Chr10	20081194	20081206	12
Deletion	Chr3	21855651	21855652	1
Deletion	Chr3	24273318	24273319	1
Deletion	Chr3	30025416	30025420	4
Deletion	Chr3	30930153	30930154	1
Deletion	Chr2	34844133	34844139	6
Deletion	Chr4	36269108	36269109	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	13028832	13879386
Inversion	Chr8	13032053	13879396

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes