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Mutant Information

Mutant Name	FN2438 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2438 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 68

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3048793 T-A Hetero INTERGENIC
SBS Chr1 3753696 A-T Hetero INTERGENIC
SBS Chr1 8223407 C-T Hetero INTERGENIC
SBS Chr1 35666959 C-T Homo SYNONYMOUS_CODING
SBS Chr2 461712 T-C Hetero INTERGENIC
SBS Chr2 4947106 T-A Hetero INTRON
SBS Chr2 9578398 G-A Hetero INTERGENIC
SBS Chr2 21370108 G-A Hetero INTERGENIC
SBS Chr2 29152454 C-T Homo INTRON
SBS Chr2 30763475 C-A Hetero INTERGENIC
SBS Chr2 35628875 C-T Homo INTERGENIC
SBS Chr3 15952527 T-A Homo INTERGENIC
SBS Chr3 23440512 G-A Hetero INTERGENIC
SBS Chr4 540613 G-C Hetero INTERGENIC
SBS Chr4 1079478 T-A Hetero INTERGENIC
SBS Chr4 7888842 T-C Hetero INTERGENIC
SBS Chr4 9262071 T-C Hetero INTERGENIC
SBS Chr4 11940880 G-A Hetero INTERGENIC
SBS Chr4 16579427 G-A Hetero INTERGENIC
SBS Chr4 26362502 T-G Homo INTRON
SBS Chr4 27192661 G-A Homo INTERGENIC
SBS Chr5 12630672 A-G Hetero INTERGENIC
SBS Chr5 19036571 G-A Hetero INTERGENIC
SBS Chr5 19087592 A-G Hetero INTERGENIC
SBS Chr5 23425130 G-T Hetero INTERGENIC
SBS Chr5 29574514 C-T Hetero INTERGENIC
SBS Chr6 5124303 G-A Hetero INTERGENIC
SBS Chr6 12494724 G-A Homo INTERGENIC
SBS Chr6 13267853 T-G Hetero INTERGENIC
SBS Chr6 18293260 C-T Hetero INTERGENIC
SBS Chr6 22418451 C-T Homo INTERGENIC
SBS Chr6 22418454 T-G Homo INTERGENIC
SBS Chr6 22418455 T-A Homo INTERGENIC
SBS Chr6 22418456 C-A Homo INTERGENIC
SBS Chr6 27558335 G-A Hetero INTERGENIC
SBS Chr7 3620243 C-T Hetero UTR_3_PRIME
SBS Chr7 9462000 C-A Hetero INTERGENIC
SBS Chr7 9462002 C-T Hetero INTERGENIC
SBS Chr7 25272946 A-T Hetero INTERGENIC
SBS Chr7 25678918 G-A Hetero INTERGENIC
SBS Chr8 3154490 T-G Homo INTERGENIC
SBS Chr8 11666260 T-G Hetero INTERGENIC
SBS Chr8 16219335 T-A Homo INTERGENIC
SBS Chr8 19697738 A-G Hetero INTERGENIC
SBS Chr8 19967135 G-T Hetero INTERGENIC
SBS Chr8 21411078 C-T Hetero INTERGENIC
SBS Chr8 21738695 C-T Homo INTRON
SBS Chr8 28698946 C-T Hetero INTRON
SBS Chr9 3791906 C-T Homo INTERGENIC
SBS Chr9 5965812 G-T Hetero INTERGENIC
SBS Chr9 7542506 T-A Hetero INTRON
SBS Chr9 7542507 C-A Hetero INTRON
SBS Chr9 21438558 C-T Homo INTERGENIC
SBS Chr9 21438561 A-T Homo INTERGENIC
SBS Chr10 838874 C-T Homo INTERGENIC
SBS Chr10 5706917 G-A Homo INTERGENIC
SBS Chr10 14736728 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g092300
SBS Chr10 21377124 G-A Homo INTERGENIC
SBS Chr10 21377125 T-A Homo INTERGENIC
SBS Chr10 21377126 T-A Homo INTERGENIC
SBS Chr11 2590686 C-A Homo INTERGENIC
SBS Chr11 6218612 G-A Hetero INTERGENIC
SBS Chr11 13011433 G-A Hetero INTERGENIC
SBS Chr11 17393812 T-C Hetero INTERGENIC
SBS Chr11 21791570 T-C Hetero INTERGENIC
SBS Chr11 23470183 A-G Hetero INTRON
SBS Chr12 10827398 T-A Homo INTERGENIC
SBS Chr12 26188021 A-T Hetero INTRON

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1648198 1648201 3
Deletion Chr7 3191088 3191089 1
Deletion Chr7 3957480 3957494 14
Deletion Chr2 5376618 5376619 1
Deletion Chr9 8568931 8568932 1
Deletion Chr4 8888937 8888944 7
Deletion Chr9 10418566 10418568 2
Deletion Chr7 11700001 11922000 221999 8
Deletion Chr7 11924001 11984000 59999
Deletion Chr6 13242486 13242487 1 OsKitaake06g139700
Deletion Chr11 13347208 13347212 4
Deletion Chr11 21987542 21987544 2
Deletion Chr3 22065138 22065140 2
Deletion Chr5 22731742 22731743 1
Deletion Chr6 23322606 23322607 1
Deletion Chr4 24108022 24108024 2
Deletion Chr8 28724703 28724704 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21765199 21765202 2
Insertion Chr3 18234954 18234962 7
Insertion Chr3 28425865 28425871 5
Insertion Chr4 22084898 22084901 2
Insertion Chr5 3714656 3714659 2
Insertion Chr6 15608979 15608982 2
Insertion Chr12 23333501 23333506 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 11939498 12501466 OsKitaake01g146700
Inversion Chr1 11939502 12501464 OsKitaake01g146700
Inversion Chr5 22148608 22403280
Inversion Chr5 22148610 22403282

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3048793	T-A	Hetero	INTERGENIC
SBS	Chr1	3753696	A-T	Hetero	INTERGENIC
SBS	Chr1	8223407	C-T	Hetero	INTERGENIC
SBS	Chr1	35666959	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	461712	T-C	Hetero	INTERGENIC
SBS	Chr2	4947106	T-A	Hetero	INTRON
SBS	Chr2	9578398	G-A	Hetero	INTERGENIC
SBS	Chr2	21370108	G-A	Hetero	INTERGENIC
SBS	Chr2	29152454	C-T	Homo	INTRON
SBS	Chr2	30763475	C-A	Hetero	INTERGENIC
SBS	Chr2	35628875	C-T	Homo	INTERGENIC
SBS	Chr3	15952527	T-A	Homo	INTERGENIC
SBS	Chr3	23440512	G-A	Hetero	INTERGENIC
SBS	Chr4	540613	G-C	Hetero	INTERGENIC
SBS	Chr4	1079478	T-A	Hetero	INTERGENIC
SBS	Chr4	7888842	T-C	Hetero	INTERGENIC
SBS	Chr4	9262071	T-C	Hetero	INTERGENIC
SBS	Chr4	11940880	G-A	Hetero	INTERGENIC
SBS	Chr4	16579427	G-A	Hetero	INTERGENIC
SBS	Chr4	26362502	T-G	Homo	INTRON
SBS	Chr4	27192661	G-A	Homo	INTERGENIC
SBS	Chr5	12630672	A-G	Hetero	INTERGENIC
SBS	Chr5	19036571	G-A	Hetero	INTERGENIC
SBS	Chr5	19087592	A-G	Hetero	INTERGENIC
SBS	Chr5	23425130	G-T	Hetero	INTERGENIC
SBS	Chr5	29574514	C-T	Hetero	INTERGENIC
SBS	Chr6	5124303	G-A	Hetero	INTERGENIC
SBS	Chr6	12494724	G-A	Homo	INTERGENIC
SBS	Chr6	13267853	T-G	Hetero	INTERGENIC
SBS	Chr6	18293260	C-T	Hetero	INTERGENIC
SBS	Chr6	22418451	C-T	Homo	INTERGENIC
SBS	Chr6	22418454	T-G	Homo	INTERGENIC
SBS	Chr6	22418455	T-A	Homo	INTERGENIC
SBS	Chr6	22418456	C-A	Homo	INTERGENIC
SBS	Chr6	27558335	G-A	Hetero	INTERGENIC
SBS	Chr7	3620243	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	9462000	C-A	Hetero	INTERGENIC
SBS	Chr7	9462002	C-T	Hetero	INTERGENIC
SBS	Chr7	25272946	A-T	Hetero	INTERGENIC
SBS	Chr7	25678918	G-A	Hetero	INTERGENIC
SBS	Chr8	3154490	T-G	Homo	INTERGENIC
SBS	Chr8	11666260	T-G	Hetero	INTERGENIC
SBS	Chr8	16219335	T-A	Homo	INTERGENIC
SBS	Chr8	19697738	A-G	Hetero	INTERGENIC
SBS	Chr8	19967135	G-T	Hetero	INTERGENIC
SBS	Chr8	21411078	C-T	Hetero	INTERGENIC
SBS	Chr8	21738695	C-T	Homo	INTRON
SBS	Chr8	28698946	C-T	Hetero	INTRON
SBS	Chr9	3791906	C-T	Homo	INTERGENIC
SBS	Chr9	5965812	G-T	Hetero	INTERGENIC
SBS	Chr9	7542506	T-A	Hetero	INTRON
SBS	Chr9	7542507	C-A	Hetero	INTRON
SBS	Chr9	21438558	C-T	Homo	INTERGENIC
SBS	Chr9	21438561	A-T	Homo	INTERGENIC
SBS	Chr10	838874	C-T	Homo	INTERGENIC
SBS	Chr10	5706917	G-A	Homo	INTERGENIC
SBS	Chr10	14736728	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g092300
SBS	Chr10	21377124	G-A	Homo	INTERGENIC
SBS	Chr10	21377125	T-A	Homo	INTERGENIC
SBS	Chr10	21377126	T-A	Homo	INTERGENIC
SBS	Chr11	2590686	C-A	Homo	INTERGENIC
SBS	Chr11	6218612	G-A	Hetero	INTERGENIC
SBS	Chr11	13011433	G-A	Hetero	INTERGENIC
SBS	Chr11	17393812	T-C	Hetero	INTERGENIC
SBS	Chr11	21791570	T-C	Hetero	INTERGENIC
SBS	Chr11	23470183	A-G	Hetero	INTRON
SBS	Chr12	10827398	T-A	Homo	INTERGENIC
SBS	Chr12	26188021	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1648198	1648201	3
Deletion	Chr7	3191088	3191089	1
Deletion	Chr7	3957480	3957494	14
Deletion	Chr2	5376618	5376619	1
Deletion	Chr9	8568931	8568932	1
Deletion	Chr4	8888937	8888944	7
Deletion	Chr9	10418566	10418568	2
Deletion	Chr7	11700001	11922000	221999	8
Deletion	Chr7	11924001	11984000	59999
Deletion	Chr6	13242486	13242487	1	OsKitaake06g139700
Deletion	Chr11	13347208	13347212	4
Deletion	Chr11	21987542	21987544	2
Deletion	Chr3	22065138	22065140	2
Deletion	Chr5	22731742	22731743	1
Deletion	Chr6	23322606	23322607	1
Deletion	Chr4	24108022	24108024	2
Deletion	Chr8	28724703	28724704	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11939498	12501466	OsKitaake01g146700
Inversion	Chr1	11939502	12501464	OsKitaake01g146700
Inversion	Chr5	22148608	22403280
Inversion	Chr5	22148610	22403282

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes