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| Mutant Information |
|---|
| Mutant Name | FN2439 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2439 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 552683 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 42552480 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 6674102 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 17630628 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 31825354 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 6935995 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 14061225 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 23028363 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29596339 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 34195643 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 9455553 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31229519 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 31257670 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35750455 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11462144 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 22057335 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g179900 |
| SBS | Chr6 | 2656424 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 14546347 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 7501429 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 11569397 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25798998 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 8038290 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 17599319 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g133000 |
| SBS | Chr10 | 20164502 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 20164504 | A-G | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 13652145 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 16327397 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21296702 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 12744693 | A-C | Homo | INTERGENIC | |
| SBS | Chr12 | 14017006 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 14017788 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 19410399 | C-T | Homo | INTERGENIC |
Deletions: 5
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 6045295 | 6045300 | 4 | |
| Insertion | Chr5 | 745553 | 745561 | 7 | |
| Insertion | Chr5 | 26912875 | 26912878 | 2 | |
| Insertion | Chr1 | 17153501 | 17153503 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 5415841 | 5517606 | OsKitaake02g074300 |
| Inversion | Chr5 | 29877579 | 29938027 | |
| Inversion | Chr5 | 29877587 | 29938035 |