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Mutant Information

Mutant Name	FN244-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN244-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8594549 G-A Hetero UTR_3_PRIME
SBS Chr1 13920211 A-T Hetero INTERGENIC
SBS Chr1 16532816 G-A Hetero INTERGENIC
SBS Chr1 25605022 G-C Homo UTR_5_PRIME
SBS Chr1 29829062 A-G Homo INTERGENIC
SBS Chr1 40260556 T-G Hetero UTR_3_PRIME
SBS Chr1 40301224 G-A Hetero INTERGENIC
SBS Chr2 5562009 C-T Hetero INTRON
SBS Chr3 4294550 C-T Hetero INTERGENIC
SBS Chr3 14158398 C-T Homo INTERGENIC
SBS Chr3 16028093 C-T Homo INTERGENIC
SBS Chr3 22701053 C-A Homo INTERGENIC
SBS Chr4 319639 G-A Homo INTERGENIC
SBS Chr4 4285450 C-T Homo INTERGENIC
SBS Chr4 33488244 G-A Hetero INTERGENIC
SBS Chr5 14340679 G-C Hetero INTERGENIC
SBS Chr5 21019673 T-C Hetero INTERGENIC
SBS Chr5 21019674 A-G Hetero INTERGENIC
SBS Chr5 26430717 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g234200
SBS Chr5 30096571 C-T Hetero INTERGENIC
SBS Chr6 8767622 C-A Hetero INTERGENIC
SBS Chr6 14121094 G-T Hetero INTERGENIC
SBS Chr6 14289393 A-T Homo INTERGENIC
SBS Chr6 15205187 G-A Hetero INTERGENIC
SBS Chr6 21752750 G-A Hetero INTERGENIC
SBS Chr8 14972 G-T Homo INTERGENIC
SBS Chr8 870642 T-A Hetero INTERGENIC
SBS Chr8 10134999 C-T Hetero INTERGENIC
SBS Chr9 10993692 C-T Homo STOP_GAINED OsKitaake09g068200
SBS Chr10 2421914 A-T Hetero INTRON
SBS Chr10 5261154 C-A Hetero INTERGENIC
SBS Chr10 6596861 C-G Hetero INTERGENIC
SBS Chr10 8355097 G-A Homo INTERGENIC
SBS Chr11 7386563 A-G Hetero INTERGENIC
SBS Chr11 24886978 C-A Homo INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 228001 296000 67999 14
Deletion Chr7 1611068 1611071 3
Deletion Chr7 2850971 2851292 321
Deletion Chr1 4031501 4031509 8 OsKitaake01g054400
Deletion Chr4 4289473 4289479 6
Deletion Chr1 5620049 5620065 16
Deletion Chr8 5653563 5653569 6
Deletion Chr3 5892828 5892833 5
Deletion Chr10 6282302 6282309 7
Deletion Chr10 8202734 8202739 5
Deletion Chr5 11200245 11200248 3
Deletion Chr5 13956486 13956493 7
Deletion Chr3 14158368 14158372 4
Deletion Chr9 15656901 15656902 1
Deletion Chr10 16834096 16834100 4
Deletion Chr4 21551689 21551698 9 OsKitaake04g121600
Deletion Chr7 22588681 22588749 68
Deletion Chr12 23120715 23120717 2
Deletion Chr3 23628299 23628314 15
Deletion Chr6 27076701 27076705 4
Deletion Chr11 27871396 27871398 2
Deletion Chr6 28127742 28127743 1
Deletion Chr1 36274001 36294000 19999 OsKitaake01g385000

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1175746 1175749 2
Insertion Chr1 2036772 2036774 1
Insertion Chr2 8532363 8532366 2
Insertion Chr6 29366843 29366847 3
Insertion Chr6 30111271 30111274 2
Insertion Chr7 3416576 3416579 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 7307115 7388722 OsKitaake11g083200
Inversion Chr11 7314066 7388731
Inversion Chr5 26513934 27302479 OsKitaake05g235500
Inversion Chr5 26513940 27302813 OsKitaake05g235500

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 13582645 Chr4 9661043

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8594549	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	13920211	A-T	Hetero	INTERGENIC
SBS	Chr1	16532816	G-A	Hetero	INTERGENIC
SBS	Chr1	25605022	G-C	Homo	UTR_5_PRIME
SBS	Chr1	29829062	A-G	Homo	INTERGENIC
SBS	Chr1	40260556	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	40301224	G-A	Hetero	INTERGENIC
SBS	Chr2	5562009	C-T	Hetero	INTRON
SBS	Chr3	4294550	C-T	Hetero	INTERGENIC
SBS	Chr3	14158398	C-T	Homo	INTERGENIC
SBS	Chr3	16028093	C-T	Homo	INTERGENIC
SBS	Chr3	22701053	C-A	Homo	INTERGENIC
SBS	Chr4	319639	G-A	Homo	INTERGENIC
SBS	Chr4	4285450	C-T	Homo	INTERGENIC
SBS	Chr4	33488244	G-A	Hetero	INTERGENIC
SBS	Chr5	14340679	G-C	Hetero	INTERGENIC
SBS	Chr5	21019673	T-C	Hetero	INTERGENIC
SBS	Chr5	21019674	A-G	Hetero	INTERGENIC
SBS	Chr5	26430717	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g234200
SBS	Chr5	30096571	C-T	Hetero	INTERGENIC
SBS	Chr6	8767622	C-A	Hetero	INTERGENIC
SBS	Chr6	14121094	G-T	Hetero	INTERGENIC
SBS	Chr6	14289393	A-T	Homo	INTERGENIC
SBS	Chr6	15205187	G-A	Hetero	INTERGENIC
SBS	Chr6	21752750	G-A	Hetero	INTERGENIC
SBS	Chr8	14972	G-T	Homo	INTERGENIC
SBS	Chr8	870642	T-A	Hetero	INTERGENIC
SBS	Chr8	10134999	C-T	Hetero	INTERGENIC
SBS	Chr9	10993692	C-T	Homo	STOP_GAINED	OsKitaake09g068200
SBS	Chr10	2421914	A-T	Hetero	INTRON
SBS	Chr10	5261154	C-A	Hetero	INTERGENIC
SBS	Chr10	6596861	C-G	Hetero	INTERGENIC
SBS	Chr10	8355097	G-A	Homo	INTERGENIC
SBS	Chr11	7386563	A-G	Hetero	INTERGENIC
SBS	Chr11	24886978	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	228001	296000	67999	14
Deletion	Chr7	1611068	1611071	3
Deletion	Chr7	2850971	2851292	321
Deletion	Chr1	4031501	4031509	8	OsKitaake01g054400
Deletion	Chr4	4289473	4289479	6
Deletion	Chr1	5620049	5620065	16
Deletion	Chr8	5653563	5653569	6
Deletion	Chr3	5892828	5892833	5
Deletion	Chr10	6282302	6282309	7
Deletion	Chr10	8202734	8202739	5
Deletion	Chr5	11200245	11200248	3
Deletion	Chr5	13956486	13956493	7
Deletion	Chr3	14158368	14158372	4
Deletion	Chr9	15656901	15656902	1
Deletion	Chr10	16834096	16834100	4
Deletion	Chr4	21551689	21551698	9	OsKitaake04g121600
Deletion	Chr7	22588681	22588749	68
Deletion	Chr12	23120715	23120717	2
Deletion	Chr3	23628299	23628314	15
Deletion	Chr6	27076701	27076705	4
Deletion	Chr11	27871396	27871398	2
Deletion	Chr6	28127742	28127743	1
Deletion	Chr1	36274001	36294000	19999	OsKitaake01g385000

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	7307115	7388722	OsKitaake11g083200
Inversion	Chr11	7314066	7388731
Inversion	Chr5	26513934	27302479	OsKitaake05g235500
Inversion	Chr5	26513940	27302813	OsKitaake05g235500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes