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Mutant Information

Mutant Name	FN2441 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2441 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9748754 C-T Hetero INTERGENIC
SBS Chr1 14699770 G-C Hetero INTERGENIC
SBS Chr1 16189186 T-A Hetero INTERGENIC
SBS Chr1 44125784 C-T Homo INTERGENIC
SBS Chr2 1980228 A-G Hetero INTERGENIC
SBS Chr2 2005980 C-T Hetero INTRON
SBS Chr2 16709434 G-A Hetero INTERGENIC
SBS Chr2 25120563 G-T Hetero INTERGENIC
SBS Chr2 31566416 C-A Hetero INTERGENIC
SBS Chr2 33049646 G-C Hetero INTERGENIC
SBS Chr3 1433841 A-G Homo INTERGENIC
SBS Chr3 16383783 G-C Hetero INTERGENIC
SBS Chr4 1604322 G-A Hetero INTERGENIC
SBS Chr4 7987502 C-T Homo SYNONYMOUS_CODING
SBS Chr4 26349676 T-A Hetero INTERGENIC
SBS Chr4 26989856 G-C Hetero INTERGENIC
SBS Chr5 1872573 G-A Hetero INTERGENIC
SBS Chr5 27539493 T-A Homo INTRON
SBS Chr6 13407754 G-A Hetero INTERGENIC
SBS Chr6 13914878 G-T Hetero INTERGENIC
SBS Chr6 16455893 G-A Hetero INTERGENIC
SBS Chr6 29703753 A-G Homo INTERGENIC
SBS Chr6 30182763 G-A Hetero INTRON
SBS Chr6 31000305 A-G Homo INTERGENIC
SBS Chr7 13345595 T-C Homo INTERGENIC
SBS Chr7 14855639 G-A Hetero INTERGENIC
SBS Chr7 15141014 A-T Homo INTERGENIC
SBS Chr7 15233182 T-A Homo INTERGENIC
SBS Chr7 16640434 G-A Homo INTERGENIC
SBS Chr7 18036480 G-A Hetero INTERGENIC
SBS Chr7 29364527 A-G Hetero INTERGENIC
SBS Chr8 8204290 T-C Homo INTERGENIC
SBS Chr8 20457743 T-C Homo INTRON
SBS Chr9 13038641 C-T Hetero INTERGENIC
SBS Chr9 21400931 C-A Homo INTERGENIC
SBS Chr10 10555449 A-T Hetero INTERGENIC
SBS Chr10 12778026 C-T Hetero INTERGENIC
SBS Chr10 19298180 C-T Homo SYNONYMOUS_CODING
SBS Chr10 20439343 G-A Homo INTERGENIC
SBS Chr10 20566367 G-T Homo INTERGENIC
SBS Chr11 5941191 G-A Hetero INTERGENIC
SBS Chr11 8894542 C-T Hetero INTERGENIC
SBS Chr11 19254798 G-A Homo INTERGENIC
SBS Chr11 25929171 A-G Hetero INTERGENIC
SBS Chr12 4705198 G-A Hetero INTERGENIC
SBS Chr12 7593304 A-T Hetero INTERGENIC
SBS Chr12 7593309 T-A Hetero INTERGENIC
SBS Chr12 8499798 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g087500
SBS Chr12 18617730 C-T Hetero INTERGENIC
SBS Chr12 26759095 G-A Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2436702 2436703 1
Deletion Chr7 3748425 3748437 12
Deletion Chr10 3803218 3803225 7
Deletion Chr12 7102037 7102038 1
Deletion Chr2 7326225 7326226 1
Deletion Chr10 7329721 7329722 1
Deletion Chr7 11374730 11374740 10
Deletion Chr11 14958388 14958389 1
Deletion Chr6 15215483 15215486 3 OsKitaake06g151500
Deletion Chr6 15853077 15853080 3
Deletion Chr7 16134613 16134619 6
Deletion Chr6 17300004 17300005 1
Deletion Chr4 18260312 18260314 2
Deletion Chr9 18641233 18641234 1
Deletion Chr6 18999161 18999168 7
Deletion Chr1 19602268 19602269 1
Deletion Chr11 23177001 23226000 48999 9
Deletion Chr5 24559914 24559923 9
Deletion Chr7 24684125 24684132 7 OsKitaake07g219800
Deletion Chr8 24824288 24824290 2
Deletion Chr6 25056587 25056596 9
Deletion Chr12 25548060 25548065 5
Deletion Chr7 25553335 25553343 8
Deletion Chr5 27096698 27096706 8
Deletion Chr5 27537236 27537255 19 OsKitaake05g251000
Deletion Chr1 28269539 28269548 9
Deletion Chr1 28350491 28350493 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3813071 3813074 2
Insertion Chr2 6932554 6932558 3
Insertion Chr2 28849671 28849673 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9748754	C-T	Hetero	INTERGENIC
SBS	Chr1	14699770	G-C	Hetero	INTERGENIC
SBS	Chr1	16189186	T-A	Hetero	INTERGENIC
SBS	Chr1	44125784	C-T	Homo	INTERGENIC
SBS	Chr2	1980228	A-G	Hetero	INTERGENIC
SBS	Chr2	2005980	C-T	Hetero	INTRON
SBS	Chr2	16709434	G-A	Hetero	INTERGENIC
SBS	Chr2	25120563	G-T	Hetero	INTERGENIC
SBS	Chr2	31566416	C-A	Hetero	INTERGENIC
SBS	Chr2	33049646	G-C	Hetero	INTERGENIC
SBS	Chr3	1433841	A-G	Homo	INTERGENIC
SBS	Chr3	16383783	G-C	Hetero	INTERGENIC
SBS	Chr4	1604322	G-A	Hetero	INTERGENIC
SBS	Chr4	7987502	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	26349676	T-A	Hetero	INTERGENIC
SBS	Chr4	26989856	G-C	Hetero	INTERGENIC
SBS	Chr5	1872573	G-A	Hetero	INTERGENIC
SBS	Chr5	27539493	T-A	Homo	INTRON
SBS	Chr6	13407754	G-A	Hetero	INTERGENIC
SBS	Chr6	13914878	G-T	Hetero	INTERGENIC
SBS	Chr6	16455893	G-A	Hetero	INTERGENIC
SBS	Chr6	29703753	A-G	Homo	INTERGENIC
SBS	Chr6	30182763	G-A	Hetero	INTRON
SBS	Chr6	31000305	A-G	Homo	INTERGENIC
SBS	Chr7	13345595	T-C	Homo	INTERGENIC
SBS	Chr7	14855639	G-A	Hetero	INTERGENIC
SBS	Chr7	15141014	A-T	Homo	INTERGENIC
SBS	Chr7	15233182	T-A	Homo	INTERGENIC
SBS	Chr7	16640434	G-A	Homo	INTERGENIC
SBS	Chr7	18036480	G-A	Hetero	INTERGENIC
SBS	Chr7	29364527	A-G	Hetero	INTERGENIC
SBS	Chr8	8204290	T-C	Homo	INTERGENIC
SBS	Chr8	20457743	T-C	Homo	INTRON
SBS	Chr9	13038641	C-T	Hetero	INTERGENIC
SBS	Chr9	21400931	C-A	Homo	INTERGENIC
SBS	Chr10	10555449	A-T	Hetero	INTERGENIC
SBS	Chr10	12778026	C-T	Hetero	INTERGENIC
SBS	Chr10	19298180	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr10	20439343	G-A	Homo	INTERGENIC
SBS	Chr10	20566367	G-T	Homo	INTERGENIC
SBS	Chr11	5941191	G-A	Hetero	INTERGENIC
SBS	Chr11	8894542	C-T	Hetero	INTERGENIC
SBS	Chr11	19254798	G-A	Homo	INTERGENIC
SBS	Chr11	25929171	A-G	Hetero	INTERGENIC
SBS	Chr12	4705198	G-A	Hetero	INTERGENIC
SBS	Chr12	7593304	A-T	Hetero	INTERGENIC
SBS	Chr12	7593309	T-A	Hetero	INTERGENIC
SBS	Chr12	8499798	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g087500
SBS	Chr12	18617730	C-T	Hetero	INTERGENIC
SBS	Chr12	26759095	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2436702	2436703	1
Deletion	Chr7	3748425	3748437	12
Deletion	Chr10	3803218	3803225	7
Deletion	Chr12	7102037	7102038	1
Deletion	Chr2	7326225	7326226	1
Deletion	Chr10	7329721	7329722	1
Deletion	Chr7	11374730	11374740	10
Deletion	Chr11	14958388	14958389	1
Deletion	Chr6	15215483	15215486	3	OsKitaake06g151500
Deletion	Chr6	15853077	15853080	3
Deletion	Chr7	16134613	16134619	6
Deletion	Chr6	17300004	17300005	1
Deletion	Chr4	18260312	18260314	2
Deletion	Chr9	18641233	18641234	1
Deletion	Chr6	18999161	18999168	7
Deletion	Chr1	19602268	19602269	1
Deletion	Chr11	23177001	23226000	48999	9
Deletion	Chr5	24559914	24559923	9
Deletion	Chr7	24684125	24684132	7	OsKitaake07g219800
Deletion	Chr8	24824288	24824290	2
Deletion	Chr6	25056587	25056596	9
Deletion	Chr12	25548060	25548065	5
Deletion	Chr7	25553335	25553343	8
Deletion	Chr5	27096698	27096706	8
Deletion	Chr5	27537236	27537255	19	OsKitaake05g251000
Deletion	Chr1	28269539	28269548	9
Deletion	Chr1	28350491	28350493	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes