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Mutant Information

Mutant Name	FN2442 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2442 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5556918 G-A Hetero INTERGENIC
SBS Chr1 6411888 T-A Hetero INTERGENIC
SBS Chr1 29444259 G-A Hetero INTERGENIC
SBS Chr2 5893973 G-T Hetero INTERGENIC
SBS Chr2 9563478 A-G Hetero INTERGENIC
SBS Chr3 20455473 G-A Hetero INTERGENIC
SBS Chr3 22423671 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 30522397 C-A Hetero INTERGENIC
SBS Chr3 30557114 A-G Hetero INTERGENIC
SBS Chr4 22038898 C-A Hetero INTERGENIC
SBS Chr4 23718419 G-T Hetero INTERGENIC
SBS Chr4 28021275 T-C Hetero INTERGENIC
SBS Chr5 1966870 C-T Homo INTERGENIC
SBS Chr5 4882674 A-T Hetero INTERGENIC
SBS Chr5 12488215 C-A Hetero INTERGENIC
SBS Chr5 15244536 T-C Hetero INTRON
SBS Chr5 28789877 T-A Hetero INTERGENIC
SBS Chr5 29012938 A-T Hetero INTERGENIC
SBS Chr6 2234263 A-T Hetero INTERGENIC
SBS Chr6 7037314 C-G Hetero INTERGENIC
SBS Chr6 11308029 T-G Hetero INTRON
SBS Chr6 16561610 T-C Homo INTERGENIC
SBS Chr6 27335324 C-A Hetero INTERGENIC
SBS Chr7 19247763 A-G Hetero INTERGENIC
SBS Chr8 1904544 T-A Hetero INTERGENIC
SBS Chr8 1904545 C-A Hetero INTERGENIC
SBS Chr8 14450950 G-T Homo INTERGENIC
SBS Chr8 16399269 C-T Hetero INTERGENIC
SBS Chr8 19346555 T-G Hetero INTERGENIC
SBS Chr8 19395436 C-T Hetero INTERGENIC
SBS Chr9 8708680 G-A Hetero INTERGENIC
SBS Chr9 14677834 T-C Hetero INTRON
SBS Chr9 18328762 C-G Homo INTERGENIC
SBS Chr9 18402554 T-C Homo INTERGENIC
SBS Chr9 21552419 T-C Hetero SYNONYMOUS_CODING
SBS Chr9 21636990 G-A Hetero INTERGENIC
SBS Chr11 2662468 G-A Homo INTERGENIC
SBS Chr11 16688321 C-G Homo INTRON
SBS Chr11 18355488 C-T Hetero INTERGENIC
SBS Chr11 21728221 A-G Homo INTERGENIC
SBS Chr12 19464437 T-C Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 8610634 8610636 2
Deletion Chr10 9144330 9144331 1
Deletion Chr10 12395210 12395215 5
Deletion Chr4 16541349 16541364 15
Deletion Chr12 20351110 20351115 5
Deletion Chr12 21024362 21024364 2
Deletion Chr7 27486111 27486114 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11414996 11415002 5
Insertion Chr4 12574045 12574049 3
Insertion Chr7 20549589 20549593 3
Insertion Chr10 4492991 4492995 3
Insertion Chr6 7853292 7853295 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 2373627 2375048 OsKitaake12g036200
Inversion Chr12 2373629 2375052 OsKitaake12g036200
Inversion Chr6 7577494 7629272
Inversion Chr6 7577509 7629389
Inversion Chr12 8250653 8808736 OsKitaake12g088600

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8808729 Chr7 4622112 OsKitaake12g088600
Translocation Chr8 13814428 Chr7 4275091
Translocation Chr8 13814777 Chr7 4275077
Translocation Chr8 28724078 Chr1 32125918 OsKitaake08g246600
Translocation Chr8 28741163 Chr1 32125915 OsKitaake08g246900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5556918	G-A	Hetero	INTERGENIC
SBS	Chr1	6411888	T-A	Hetero	INTERGENIC
SBS	Chr1	29444259	G-A	Hetero	INTERGENIC
SBS	Chr2	5893973	G-T	Hetero	INTERGENIC
SBS	Chr2	9563478	A-G	Hetero	INTERGENIC
SBS	Chr3	20455473	G-A	Hetero	INTERGENIC
SBS	Chr3	22423671	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	30522397	C-A	Hetero	INTERGENIC
SBS	Chr3	30557114	A-G	Hetero	INTERGENIC
SBS	Chr4	22038898	C-A	Hetero	INTERGENIC
SBS	Chr4	23718419	G-T	Hetero	INTERGENIC
SBS	Chr4	28021275	T-C	Hetero	INTERGENIC
SBS	Chr5	1966870	C-T	Homo	INTERGENIC
SBS	Chr5	4882674	A-T	Hetero	INTERGENIC
SBS	Chr5	12488215	C-A	Hetero	INTERGENIC
SBS	Chr5	15244536	T-C	Hetero	INTRON
SBS	Chr5	28789877	T-A	Hetero	INTERGENIC
SBS	Chr5	29012938	A-T	Hetero	INTERGENIC
SBS	Chr6	2234263	A-T	Hetero	INTERGENIC
SBS	Chr6	7037314	C-G	Hetero	INTERGENIC
SBS	Chr6	11308029	T-G	Hetero	INTRON
SBS	Chr6	16561610	T-C	Homo	INTERGENIC
SBS	Chr6	27335324	C-A	Hetero	INTERGENIC
SBS	Chr7	19247763	A-G	Hetero	INTERGENIC
SBS	Chr8	1904544	T-A	Hetero	INTERGENIC
SBS	Chr8	1904545	C-A	Hetero	INTERGENIC
SBS	Chr8	14450950	G-T	Homo	INTERGENIC
SBS	Chr8	16399269	C-T	Hetero	INTERGENIC
SBS	Chr8	19346555	T-G	Hetero	INTERGENIC
SBS	Chr8	19395436	C-T	Hetero	INTERGENIC
SBS	Chr9	8708680	G-A	Hetero	INTERGENIC
SBS	Chr9	14677834	T-C	Hetero	INTRON
SBS	Chr9	18328762	C-G	Homo	INTERGENIC
SBS	Chr9	18402554	T-C	Homo	INTERGENIC
SBS	Chr9	21552419	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	21636990	G-A	Hetero	INTERGENIC
SBS	Chr11	2662468	G-A	Homo	INTERGENIC
SBS	Chr11	16688321	C-G	Homo	INTRON
SBS	Chr11	18355488	C-T	Hetero	INTERGENIC
SBS	Chr11	21728221	A-G	Homo	INTERGENIC
SBS	Chr12	19464437	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	8610634	8610636	2
Deletion	Chr10	9144330	9144331	1
Deletion	Chr10	12395210	12395215	5
Deletion	Chr4	16541349	16541364	15
Deletion	Chr12	20351110	20351115	5
Deletion	Chr12	21024362	21024364	2
Deletion	Chr7	27486111	27486114	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2373627	2375048	OsKitaake12g036200
Inversion	Chr12	2373629	2375052	OsKitaake12g036200
Inversion	Chr6	7577494	7629272
Inversion	Chr6	7577509	7629389
Inversion	Chr12	8250653	8808736	OsKitaake12g088600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes