Search Kitaake

Mutant Information

Mutant Name	FN2444 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2444 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 30995323 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g308800
SBS Chr1 39207347 C-T Hetero INTERGENIC
SBS Chr1 40110963 C-T Hetero INTERGENIC
SBS Chr1 44109193 G-T Hetero INTERGENIC
SBS Chr2 3489601 T-A Hetero INTRON
SBS Chr3 11834127 T-A Homo INTERGENIC
SBS Chr3 16685186 A-T Hetero INTERGENIC
SBS Chr3 21962138 C-T Hetero INTERGENIC
SBS Chr4 2116682 A-T Homo INTERGENIC
SBS Chr4 9792384 G-C Homo INTERGENIC
SBS Chr4 10473268 C-T Hetero INTERGENIC
SBS Chr4 15247843 G-A Homo INTERGENIC
SBS Chr4 22194557 C-T Homo INTERGENIC
SBS Chr4 22222573 A-C Hetero INTERGENIC
SBS Chr4 29362419 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g223900
SBS Chr5 4347487 C-T Hetero INTERGENIC
SBS Chr5 16903308 C-T Homo SPLICE_SITE_REGION
SBS Chr5 19695270 T-C Homo INTERGENIC
SBS Chr5 26974402 A-T Hetero INTERGENIC
SBS Chr6 17662257 T-C Hetero INTERGENIC
SBS Chr6 25463450 C-T Homo INTERGENIC
SBS Chr7 20056408 A-C Hetero INTERGENIC
SBS Chr7 29411468 G-A Hetero INTERGENIC
SBS Chr8 1268058 G-A Hetero INTERGENIC
SBS Chr8 1268059 G-T Hetero INTERGENIC
SBS Chr8 9400053 G-C Homo INTERGENIC
SBS Chr9 4719432 G-A Hetero INTERGENIC
SBS Chr10 1707490 G-A Hetero INTERGENIC
SBS Chr10 3525005 G-T Homo INTERGENIC
SBS Chr10 17448658 A-C Hetero INTERGENIC
SBS Chr10 21441415 G-A Hetero INTERGENIC
SBS Chr10 22560169 C-T Homo INTRON
SBS Chr11 208162 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g001200
SBS Chr11 9576427 G-A Homo INTERGENIC
SBS Chr11 12090363 A-G Hetero INTERGENIC
SBS Chr11 12607668 C-G Homo INTERGENIC
SBS Chr11 14787941 G-T Homo INTERGENIC
SBS Chr12 2834653 A-T Homo NON_SYNONYMOUS_CODING OsKitaake12g042400
SBS Chr12 15062946 T-G Hetero INTERGENIC
SBS Chr12 23316706 T-A Hetero INTERGENIC
SBS Chr12 23790053 A-G Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 81442 81454 12
Deletion Chr7 367495 367496 1 OsKitaake07g003100
Deletion Chr4 2734388 2734406 18
Deletion Chr4 3920589 3920629 40
Deletion Chr4 3975768 3975772 4
Deletion Chr6 4698710 4698711 1
Deletion Chr5 5595456 5595458 2
Deletion Chr3 7356859 7356861 2
Deletion Chr3 9264332 9264333 1
Deletion Chr1 11848762 11848855 93
Deletion Chr11 11984938 11984939 1
Deletion Chr12 16913596 16913606 10
Deletion Chr11 18547781 18547787 6
Deletion Chr11 20633318 20633322 4
Deletion Chr12 21962844 21962850 6
Deletion Chr4 22315651 22315652 1
Deletion Chr11 22598200 22598216 16
Deletion Chr11 23223626 23223627 1
Deletion Chr7 23853486 23853494 8
Deletion Chr7 24303529 24303530 1
Deletion Chr2 30170898 30170908 10 OsKitaake02g306700
Deletion Chr1 37102918 37102920 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4528057 4528060 2
Insertion Chr1 41606577 41606580 2
Insertion Chr5 27657357 27657362 4
Insertion Chr8 13690897 13690900 2
Insertion Chr10 13672799 13672807 7

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 722103 945444
Inversion Chr6 722107 945454
Inversion Chr1 2624189 2722441 2
Inversion Chr1 2624199 2722457 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1721079 Chr4 28701890 OsKitaake11g023100
Translocation Chr12 6233077 Chr11 1720841 2
Translocation Chr12 6233181 Chr4 28701709 OsKitaake12g072400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30995323	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g308800
SBS	Chr1	39207347	C-T	Hetero	INTERGENIC
SBS	Chr1	40110963	C-T	Hetero	INTERGENIC
SBS	Chr1	44109193	G-T	Hetero	INTERGENIC
SBS	Chr2	3489601	T-A	Hetero	INTRON
SBS	Chr3	11834127	T-A	Homo	INTERGENIC
SBS	Chr3	16685186	A-T	Hetero	INTERGENIC
SBS	Chr3	21962138	C-T	Hetero	INTERGENIC
SBS	Chr4	2116682	A-T	Homo	INTERGENIC
SBS	Chr4	9792384	G-C	Homo	INTERGENIC
SBS	Chr4	10473268	C-T	Hetero	INTERGENIC
SBS	Chr4	15247843	G-A	Homo	INTERGENIC
SBS	Chr4	22194557	C-T	Homo	INTERGENIC
SBS	Chr4	22222573	A-C	Hetero	INTERGENIC
SBS	Chr4	29362419	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g223900
SBS	Chr5	4347487	C-T	Hetero	INTERGENIC
SBS	Chr5	16903308	C-T	Homo	SPLICE_SITE_REGION
SBS	Chr5	19695270	T-C	Homo	INTERGENIC
SBS	Chr5	26974402	A-T	Hetero	INTERGENIC
SBS	Chr6	17662257	T-C	Hetero	INTERGENIC
SBS	Chr6	25463450	C-T	Homo	INTERGENIC
SBS	Chr7	20056408	A-C	Hetero	INTERGENIC
SBS	Chr7	29411468	G-A	Hetero	INTERGENIC
SBS	Chr8	1268058	G-A	Hetero	INTERGENIC
SBS	Chr8	1268059	G-T	Hetero	INTERGENIC
SBS	Chr8	9400053	G-C	Homo	INTERGENIC
SBS	Chr9	4719432	G-A	Hetero	INTERGENIC
SBS	Chr10	1707490	G-A	Hetero	INTERGENIC
SBS	Chr10	3525005	G-T	Homo	INTERGENIC
SBS	Chr10	17448658	A-C	Hetero	INTERGENIC
SBS	Chr10	21441415	G-A	Hetero	INTERGENIC
SBS	Chr10	22560169	C-T	Homo	INTRON
SBS	Chr11	208162	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g001200
SBS	Chr11	9576427	G-A	Homo	INTERGENIC
SBS	Chr11	12090363	A-G	Hetero	INTERGENIC
SBS	Chr11	12607668	C-G	Homo	INTERGENIC
SBS	Chr11	14787941	G-T	Homo	INTERGENIC
SBS	Chr12	2834653	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g042400
SBS	Chr12	15062946	T-G	Hetero	INTERGENIC
SBS	Chr12	23316706	T-A	Hetero	INTERGENIC
SBS	Chr12	23790053	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	81442	81454	12
Deletion	Chr7	367495	367496	1	OsKitaake07g003100
Deletion	Chr4	2734388	2734406	18
Deletion	Chr4	3920589	3920629	40
Deletion	Chr4	3975768	3975772	4
Deletion	Chr6	4698710	4698711	1
Deletion	Chr5	5595456	5595458	2
Deletion	Chr3	7356859	7356861	2
Deletion	Chr3	9264332	9264333	1
Deletion	Chr1	11848762	11848855	93
Deletion	Chr11	11984938	11984939	1
Deletion	Chr12	16913596	16913606	10
Deletion	Chr11	18547781	18547787	6
Deletion	Chr11	20633318	20633322	4
Deletion	Chr12	21962844	21962850	6
Deletion	Chr4	22315651	22315652	1
Deletion	Chr11	22598200	22598216	16
Deletion	Chr11	23223626	23223627	1
Deletion	Chr7	23853486	23853494	8
Deletion	Chr7	24303529	24303530	1
Deletion	Chr2	30170898	30170908	10	OsKitaake02g306700
Deletion	Chr1	37102918	37102920	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	722103	945444
Inversion	Chr6	722107	945454
Inversion	Chr1	2624189	2722441	2
Inversion	Chr1	2624199	2722457	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes