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Mutant Information

Mutant Name	FN2445 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2445 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr1 27197282 A-T Hetero INTERGENIC
SBS Chr1 37588343 C-A Hetero INTERGENIC
SBS Chr1 42947236 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g473400
SBS Chr1 43031347 G-A Homo INTRON
SBS Chr2 5155060 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g071400
SBS Chr2 35632559 T-C Hetero INTRON
SBS Chr3 23511412 C-A Hetero INTERGENIC
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr4 4523352 G-A Hetero INTERGENIC
SBS Chr4 5067814 G-A Hetero INTERGENIC
SBS Chr4 9406944 G-A Hetero INTERGENIC
SBS Chr4 13425944 T-C Hetero INTERGENIC
SBS Chr4 21601140 A-G Homo INTERGENIC
SBS Chr4 26448790 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g189700
SBS Chr4 28087754 A-G Hetero INTERGENIC
SBS Chr5 6279354 A-C Hetero INTERGENIC
SBS Chr5 12384126 G-A Hetero INTERGENIC
SBS Chr5 23536759 T-C Hetero INTRON
SBS Chr6 219131 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g001200
SBS Chr6 219135 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g001200
SBS Chr6 520581 G-A Hetero INTERGENIC
SBS Chr6 11141266 C-A Hetero INTERGENIC
SBS Chr7 2772831 C-G Hetero INTERGENIC
SBS Chr7 5474361 A-G Hetero UTR_3_PRIME
SBS Chr7 10529822 C-T Homo INTERGENIC
SBS Chr7 10647804 A-T Hetero INTRON
SBS Chr7 15252362 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g127700
SBS Chr8 2948014 G-T Homo NON_SYNONYMOUS_CODING OsKitaake08g032400
SBS Chr8 16613332 G-A Hetero INTERGENIC
SBS Chr8 28526759 T-C Hetero INTERGENIC
SBS Chr9 1951634 C-T Hetero INTERGENIC
SBS Chr9 5431838 C-T Hetero INTERGENIC
SBS Chr10 4523652 G-A Hetero INTERGENIC
SBS Chr10 4523653 C-A Hetero INTERGENIC
SBS Chr10 7707566 G-C Hetero INTERGENIC
SBS Chr10 12774186 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g077900
SBS Chr11 7624368 G-T Homo INTERGENIC
SBS Chr12 1952190 G-A Hetero INTERGENIC
SBS Chr12 8336987 C-T Homo INTRON
SBS Chr12 16995109 G-A Hetero INTERGENIC
SBS Chr12 21519852 A-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 569130 569138 8
Deletion Chr11 1808918 1808919 1
Deletion Chr2 5184001 5260000 75999 5
Deletion Chr11 9329785 9329786 1
Deletion Chr8 10310875 10310877 2
Deletion Chr6 13661548 13661556 8
Deletion Chr9 17297303 17297304 1
Deletion Chr2 19980674 19980676 2
Deletion Chr11 20493050 20493051 1
Deletion Chr1 20780939 20780941 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 10784141 10784144 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6667984 7005126
Inversion Chr5 6667988 7005124
Inversion Chr1 13958312 13961883

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 15036503 Chr2 14095792 2
Translocation Chr7 15036510 Chr2 14094424 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr1	27197282	A-T	Hetero	INTERGENIC
SBS	Chr1	37588343	C-A	Hetero	INTERGENIC
SBS	Chr1	42947236	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g473400
SBS	Chr1	43031347	G-A	Homo	INTRON
SBS	Chr2	5155060	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g071400
SBS	Chr2	35632559	T-C	Hetero	INTRON
SBS	Chr3	23511412	C-A	Hetero	INTERGENIC
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr4	4523352	G-A	Hetero	INTERGENIC
SBS	Chr4	5067814	G-A	Hetero	INTERGENIC
SBS	Chr4	9406944	G-A	Hetero	INTERGENIC
SBS	Chr4	13425944	T-C	Hetero	INTERGENIC
SBS	Chr4	21601140	A-G	Homo	INTERGENIC
SBS	Chr4	26448790	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g189700
SBS	Chr4	28087754	A-G	Hetero	INTERGENIC
SBS	Chr5	6279354	A-C	Hetero	INTERGENIC
SBS	Chr5	12384126	G-A	Hetero	INTERGENIC
SBS	Chr5	23536759	T-C	Hetero	INTRON
SBS	Chr6	219131	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g001200
SBS	Chr6	219135	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g001200
SBS	Chr6	520581	G-A	Hetero	INTERGENIC
SBS	Chr6	11141266	C-A	Hetero	INTERGENIC
SBS	Chr7	2772831	C-G	Hetero	INTERGENIC
SBS	Chr7	5474361	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	10529822	C-T	Homo	INTERGENIC
SBS	Chr7	10647804	A-T	Hetero	INTRON
SBS	Chr7	15252362	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g127700
SBS	Chr8	2948014	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g032400
SBS	Chr8	16613332	G-A	Hetero	INTERGENIC
SBS	Chr8	28526759	T-C	Hetero	INTERGENIC
SBS	Chr9	1951634	C-T	Hetero	INTERGENIC
SBS	Chr9	5431838	C-T	Hetero	INTERGENIC
SBS	Chr10	4523652	G-A	Hetero	INTERGENIC
SBS	Chr10	4523653	C-A	Hetero	INTERGENIC
SBS	Chr10	7707566	G-C	Hetero	INTERGENIC
SBS	Chr10	12774186	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g077900
SBS	Chr11	7624368	G-T	Homo	INTERGENIC
SBS	Chr12	1952190	G-A	Hetero	INTERGENIC
SBS	Chr12	8336987	C-T	Homo	INTRON
SBS	Chr12	16995109	G-A	Hetero	INTERGENIC
SBS	Chr12	21519852	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	569130	569138	8
Deletion	Chr11	1808918	1808919	1
Deletion	Chr2	5184001	5260000	75999	5
Deletion	Chr11	9329785	9329786	1
Deletion	Chr8	10310875	10310877	2
Deletion	Chr6	13661548	13661556	8
Deletion	Chr9	17297303	17297304	1
Deletion	Chr2	19980674	19980676	2
Deletion	Chr11	20493050	20493051	1
Deletion	Chr1	20780939	20780941	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6667984	7005126
Inversion	Chr5	6667988	7005124
Inversion	Chr1	13958312	13961883

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes