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Mutant Information

Mutant Name	FN2446 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2446 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2487264 T-C Hetero INTERGENIC
SBS Chr1 27520093 G-T Homo INTERGENIC
SBS Chr1 33274301 G-C Hetero INTERGENIC
SBS Chr1 33544167 C-T Homo INTERGENIC
SBS Chr2 15317462 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g159700
SBS Chr2 16167935 G-A Hetero INTERGENIC
SBS Chr2 25047226 G-A Hetero INTERGENIC
SBS Chr2 34753108 T-A Hetero INTERGENIC
SBS Chr4 11765121 C-T Homo INTERGENIC
SBS Chr4 13371709 T-A Homo UTR_3_PRIME
SBS Chr4 20105626 G-A Hetero UTR_3_PRIME
SBS Chr4 23984504 A-C Hetero INTERGENIC
SBS Chr4 23984505 C-T Hetero INTERGENIC
SBS Chr5 6349080 G-T Hetero INTERGENIC
SBS Chr5 9739898 G-T Hetero INTERGENIC
SBS Chr5 26905320 T-A Hetero INTERGENIC
SBS Chr6 2065841 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g026100
SBS Chr6 10769120 C-G Hetero INTERGENIC
SBS Chr6 11400370 C-T Hetero INTRON
SBS Chr6 24763032 T-A Hetero UTR_3_PRIME
SBS Chr6 26601770 G-C Hetero INTERGENIC
SBS Chr7 1169988 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g016000
SBS Chr7 9102558 A-G Hetero INTERGENIC
SBS Chr7 9749528 T-A Hetero INTERGENIC
SBS Chr7 16019772 A-T Hetero INTRON
SBS Chr7 20342916 C-T Hetero INTERGENIC
SBS Chr8 7540153 G-T Homo INTERGENIC
SBS Chr8 16346320 A-G Hetero INTERGENIC
SBS Chr8 25694950 C-T Hetero INTERGENIC
SBS Chr9 19661590 G-C Homo INTERGENIC
SBS Chr10 878008 T-A Hetero INTERGENIC
SBS Chr10 5260750 G-A Hetero INTERGENIC
SBS Chr10 11687565 A-G Hetero INTERGENIC
SBS Chr10 19774508 T-A Hetero INTRON
SBS Chr11 751314 A-T Hetero INTERGENIC
SBS Chr11 2177964 T-G Hetero INTRON
SBS Chr11 5297466 A-T Hetero INTRON
SBS Chr12 1927448 G-T Hetero INTERGENIC
SBS Chr12 11337823 A-G Hetero INTERGENIC
SBS Chr12 21371119 C-G Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2968463 2968466 3
Deletion Chr12 4782001 4849000 66999 4
Deletion Chr5 5671720 5671727 7
Deletion Chr12 7559001 7598000 38999 OsKitaake12g082700
Deletion Chr4 11248809 11248816 7
Deletion Chr9 13795001 13949000 153999 8
Deletion Chr9 14049001 14109000 59999 10
Deletion Chr8 24189930 24189932 2
Deletion Chr5 24347819 24347823 4 OsKitaake05g217314
Deletion Chr7 26773485 26773492 7
Deletion Chr2 27686437 27686438 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10417263 10417266 2
Insertion Chr4 21854946 21854950 3
Insertion Chr9 7980870 7980873 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6453597 6988562 OsKitaake05g070300
Inversion Chr9 13408842 14187427 OsKitaake09g095400
Inversion Chr9 13408852 14106856
Inversion Chr6 20370403 20370664
Inversion Chr6 20370411 20390863

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 6008298 Chr2 6540911 OsKitaake06g079000
Translocation Chr6 6008949 Chr2 6542094 2
Translocation Chr9 13794677 Chr7 9029204
Translocation Chr9 14050490 Chr5 4440813 OsKitaake05g051500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2487264	T-C	Hetero	INTERGENIC
SBS	Chr1	27520093	G-T	Homo	INTERGENIC
SBS	Chr1	33274301	G-C	Hetero	INTERGENIC
SBS	Chr1	33544167	C-T	Homo	INTERGENIC
SBS	Chr2	15317462	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g159700
SBS	Chr2	16167935	G-A	Hetero	INTERGENIC
SBS	Chr2	25047226	G-A	Hetero	INTERGENIC
SBS	Chr2	34753108	T-A	Hetero	INTERGENIC
SBS	Chr4	11765121	C-T	Homo	INTERGENIC
SBS	Chr4	13371709	T-A	Homo	UTR_3_PRIME
SBS	Chr4	20105626	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	23984504	A-C	Hetero	INTERGENIC
SBS	Chr4	23984505	C-T	Hetero	INTERGENIC
SBS	Chr5	6349080	G-T	Hetero	INTERGENIC
SBS	Chr5	9739898	G-T	Hetero	INTERGENIC
SBS	Chr5	26905320	T-A	Hetero	INTERGENIC
SBS	Chr6	2065841	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g026100
SBS	Chr6	10769120	C-G	Hetero	INTERGENIC
SBS	Chr6	11400370	C-T	Hetero	INTRON
SBS	Chr6	24763032	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	26601770	G-C	Hetero	INTERGENIC
SBS	Chr7	1169988	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g016000
SBS	Chr7	9102558	A-G	Hetero	INTERGENIC
SBS	Chr7	9749528	T-A	Hetero	INTERGENIC
SBS	Chr7	16019772	A-T	Hetero	INTRON
SBS	Chr7	20342916	C-T	Hetero	INTERGENIC
SBS	Chr8	7540153	G-T	Homo	INTERGENIC
SBS	Chr8	16346320	A-G	Hetero	INTERGENIC
SBS	Chr8	25694950	C-T	Hetero	INTERGENIC
SBS	Chr9	19661590	G-C	Homo	INTERGENIC
SBS	Chr10	878008	T-A	Hetero	INTERGENIC
SBS	Chr10	5260750	G-A	Hetero	INTERGENIC
SBS	Chr10	11687565	A-G	Hetero	INTERGENIC
SBS	Chr10	19774508	T-A	Hetero	INTRON
SBS	Chr11	751314	A-T	Hetero	INTERGENIC
SBS	Chr11	2177964	T-G	Hetero	INTRON
SBS	Chr11	5297466	A-T	Hetero	INTRON
SBS	Chr12	1927448	G-T	Hetero	INTERGENIC
SBS	Chr12	11337823	A-G	Hetero	INTERGENIC
SBS	Chr12	21371119	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2968463	2968466	3
Deletion	Chr12	4782001	4849000	66999	4
Deletion	Chr5	5671720	5671727	7
Deletion	Chr12	7559001	7598000	38999	OsKitaake12g082700
Deletion	Chr4	11248809	11248816	7
Deletion	Chr9	13795001	13949000	153999	8
Deletion	Chr9	14049001	14109000	59999	10
Deletion	Chr8	24189930	24189932	2
Deletion	Chr5	24347819	24347823	4	OsKitaake05g217314
Deletion	Chr7	26773485	26773492	7
Deletion	Chr2	27686437	27686438	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6453597	6988562	OsKitaake05g070300
Inversion	Chr9	13408842	14187427	OsKitaake09g095400
Inversion	Chr9	13408852	14106856
Inversion	Chr6	20370403	20370664
Inversion	Chr6	20370411	20390863

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes