Search Kitaake

Mutant Information

Mutant Name	FN2447 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2447 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10640843 G-A Hetero INTERGENIC
SBS Chr1 15694074 T-C Homo INTERGENIC
SBS Chr1 30966808 C-G Hetero INTERGENIC
SBS Chr2 4184553 T-G Hetero INTRON
SBS Chr2 4361362 C-A Hetero UTR_3_PRIME
SBS Chr2 5485003 G-A Hetero INTERGENIC
SBS Chr2 5488609 T-A Hetero INTERGENIC
SBS Chr2 5488610 C-A Hetero INTERGENIC
SBS Chr2 23389820 C-T Hetero INTERGENIC
SBS Chr2 28494612 T-C Hetero UTR_3_PRIME
SBS Chr2 34467506 A-C Hetero INTERGENIC
SBS Chr3 51061 G-A Hetero INTERGENIC
SBS Chr3 16012557 C-T Hetero INTERGENIC
SBS Chr3 30105500 T-C Hetero UTR_3_PRIME
SBS Chr3 31545950 C-G Hetero INTERGENIC
SBS Chr4 1498122 G-T Hetero INTERGENIC
SBS Chr4 1498123 G-A Hetero INTERGENIC
SBS Chr4 4091661 A-G Hetero INTERGENIC
SBS Chr4 5718551 C-A Hetero INTERGENIC
SBS Chr4 11387430 G-A Hetero INTERGENIC
SBS Chr4 13760502 G-T Hetero INTERGENIC
SBS Chr4 15475768 A-T Hetero INTERGENIC
SBS Chr5 8783642 T-C Hetero INTERGENIC
SBS Chr6 6897119 T-C Hetero INTERGENIC
SBS Chr6 12615273 G-A Homo INTERGENIC
SBS Chr6 12761476 G-A Hetero INTRON
SBS Chr6 17613262 C-A Hetero INTRON
SBS Chr6 26656435 G-A Hetero INTERGENIC
SBS Chr7 8503414 C-T Hetero INTERGENIC
SBS Chr8 6164476 C-T Homo INTERGENIC
SBS Chr8 18012061 G-A Hetero INTERGENIC
SBS Chr9 3898784 C-T Hetero INTERGENIC
SBS Chr9 11843311 C-T Hetero INTERGENIC
SBS Chr9 16421990 T-C Hetero INTRON
SBS Chr9 19145695 T-C Hetero UTR_3_PRIME
SBS Chr10 1325013 G-A Homo INTERGENIC
SBS Chr10 1325014 T-A Homo INTERGENIC
SBS Chr10 7332152 G-T Hetero INTERGENIC
SBS Chr10 21498394 T-C Hetero INTERGENIC
SBS Chr11 15143478 G-C Hetero INTERGENIC
SBS Chr11 17660385 A-G Hetero INTERGENIC
SBS Chr11 27250075 T-C Hetero INTERGENIC
SBS Chr12 11617407 G-T Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1501001 1916000 414999 21
Deletion Chr11 4464880 4464891 11
Deletion Chr6 5352474 5352477 3
Deletion Chr12 7603476 7603478 2
Deletion Chr1 8129201 8129203 2
Deletion Chr12 12321125 12321142 17
Deletion Chr1 17183686 17183851 165
Deletion Chr6 19736192 19736195 3
Deletion Chr9 20978861 20978863 2
Deletion Chr5 22042290 22042299 9
Deletion Chr8 24036001 24066000 29999 4
Deletion Chr1 26004629 26004630 1
Deletion Chr11 26327683 26327685 2
Deletion Chr4 32782693 32782704 11 OsKitaake04g264600

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 22163279 22163282 2
Insertion Chr10 6999298 6999301 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 23786056 24033557
Inversion Chr8 23786321 24068679 OsKitaake08g185700

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1325602 Chr7 15183261 OsKitaake07g127200
Translocation Chr10 1325617 Chr8 23786317
Translocation Chr2 19784366 Chr1 3193553
Translocation Chr2 19786579 Chr1 3193541
Translocation Chr8 23786064 Chr7 15182073 OsKitaake07g127200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10640843	G-A	Hetero	INTERGENIC
SBS	Chr1	15694074	T-C	Homo	INTERGENIC
SBS	Chr1	30966808	C-G	Hetero	INTERGENIC
SBS	Chr2	4184553	T-G	Hetero	INTRON
SBS	Chr2	4361362	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	5485003	G-A	Hetero	INTERGENIC
SBS	Chr2	5488609	T-A	Hetero	INTERGENIC
SBS	Chr2	5488610	C-A	Hetero	INTERGENIC
SBS	Chr2	23389820	C-T	Hetero	INTERGENIC
SBS	Chr2	28494612	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	34467506	A-C	Hetero	INTERGENIC
SBS	Chr3	51061	G-A	Hetero	INTERGENIC
SBS	Chr3	16012557	C-T	Hetero	INTERGENIC
SBS	Chr3	30105500	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	31545950	C-G	Hetero	INTERGENIC
SBS	Chr4	1498122	G-T	Hetero	INTERGENIC
SBS	Chr4	1498123	G-A	Hetero	INTERGENIC
SBS	Chr4	4091661	A-G	Hetero	INTERGENIC
SBS	Chr4	5718551	C-A	Hetero	INTERGENIC
SBS	Chr4	11387430	G-A	Hetero	INTERGENIC
SBS	Chr4	13760502	G-T	Hetero	INTERGENIC
SBS	Chr4	15475768	A-T	Hetero	INTERGENIC
SBS	Chr5	8783642	T-C	Hetero	INTERGENIC
SBS	Chr6	6897119	T-C	Hetero	INTERGENIC
SBS	Chr6	12615273	G-A	Homo	INTERGENIC
SBS	Chr6	12761476	G-A	Hetero	INTRON
SBS	Chr6	17613262	C-A	Hetero	INTRON
SBS	Chr6	26656435	G-A	Hetero	INTERGENIC
SBS	Chr7	8503414	C-T	Hetero	INTERGENIC
SBS	Chr8	6164476	C-T	Homo	INTERGENIC
SBS	Chr8	18012061	G-A	Hetero	INTERGENIC
SBS	Chr9	3898784	C-T	Hetero	INTERGENIC
SBS	Chr9	11843311	C-T	Hetero	INTERGENIC
SBS	Chr9	16421990	T-C	Hetero	INTRON
SBS	Chr9	19145695	T-C	Hetero	UTR_3_PRIME
SBS	Chr10	1325013	G-A	Homo	INTERGENIC
SBS	Chr10	1325014	T-A	Homo	INTERGENIC
SBS	Chr10	7332152	G-T	Hetero	INTERGENIC
SBS	Chr10	21498394	T-C	Hetero	INTERGENIC
SBS	Chr11	15143478	G-C	Hetero	INTERGENIC
SBS	Chr11	17660385	A-G	Hetero	INTERGENIC
SBS	Chr11	27250075	T-C	Hetero	INTERGENIC
SBS	Chr12	11617407	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1501001	1916000	414999	21
Deletion	Chr11	4464880	4464891	11
Deletion	Chr6	5352474	5352477	3
Deletion	Chr12	7603476	7603478	2
Deletion	Chr1	8129201	8129203	2
Deletion	Chr12	12321125	12321142	17
Deletion	Chr1	17183686	17183851	165
Deletion	Chr6	19736192	19736195	3
Deletion	Chr9	20978861	20978863	2
Deletion	Chr5	22042290	22042299	9
Deletion	Chr8	24036001	24066000	29999	4
Deletion	Chr1	26004629	26004630	1
Deletion	Chr11	26327683	26327685	2
Deletion	Chr4	32782693	32782704	11	OsKitaake04g264600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	23786056	24033557
Inversion	Chr8	23786321	24068679	OsKitaake08g185700

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes